BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD08RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1661 1243 0.0
>3x_Contig1661
Length = 14612
Score = 1243 bits (627), Expect = 0.0
Identities = 706/719 (98%), Gaps = 10/719 (1%)
Strand = Plus / Plus
Query: 47 aaattttaagaaactctgtattgacctctgtgtaggtaattaaatcgcagatcatcatca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9543 aaattttaagaaactctgtattgacctctgtgtaggtaattaaatcgcagatcatcatca 9602
Query: 107 aagacattagataaatatacatttaaaacacttttactttgaaatgtaggcatttgcagt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9603 aagacattagataaatatacatttaaaacacttttactttgaaatgtaggcatttgcagt 9662
Query: 167 agtactcgttttgagtttcactcgtttcgcgttgttcctgacaggagtgtacgctggagc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9663 agtactcgttttgagtttcactcgtttcgcgttgttcctgacaggagtgtacgctggagc 9722
Query: 227 aaaagatttgctttgacttactgccactttggttgagtggttagttcttttatctgaaga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9723 aaaagatttgctttgacttactgccactttggttgagtggttagttcttttatctgaaga 9782
Query: 287 tatagagtgcgacaagtcttgagcggaggagctttccaatctgattttctttgattgcat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9783 tatagagtgcgacaagtcttgagcggaggagctttccaatctgattttctttgattgcat 9842
Query: 347 gctttggctatttttgacaggcttcttgcacagcatatccagggtgatcctcctcttttt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9843 gctttggctatttttgacaggcttcttgcacagcatatccagggtgatcctcctcttttt 9902
Query: 407 ctcgcagattttccctccagcaggttttggacattctttagatgaggttgtgaggacttt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9903 ctcgcagattttccctccagcaggttttggacattctttagatgaggttgtgaggacttt 9962
Query: 467 ggtaacatttgcagtcccagaattgtagctgtttttacctggcgagaatgatgcgttcaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9963 ggtaacatttgcagtcccagaattgtagctgtttttacctggcgagaatgatgcgttcaa 10022
Query: 527 aaaggaacttgcaggtttgaaactattggttcctgtggaaaaacttgagggagcagtatt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10023 aaaggaacttgcaggtttgaaactattggttcctgtggaaaaacttgagggagcagtatt 10082
Query: 587 gttattgaaatcgattaaagcaggtgtttgaacatttgtaccattccatattaaagtgct 646
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10083 gttattgaaatcgattaaagcaggtgtttgaacatttgtaccattccatataaaagtgct 10142
Query: 647 ggttttgcaaatttttggactttttggtagtctttggcagagggaacttcaatgaaaaac 706
|||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||| |||||
Sbjct: 10143 ggttttgc-aatttttggac-ttttggtagtc-ttggcagaggg-acttcaatg-aaaac 10197
Query: 707 tttgagggaagtttcttttcaatgtcccgattcattgcaacgggtaaaaccttaaaatt 765
||||| ||| ||||| || |||||| |||||||| |||||| |||||||||||||||||
Sbjct: 10198 tttga-ggaggtttc-ttccaatgt-ccgattca-tgcaac-ggtaaaaccttaaaatt 10251
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8573
Number of Sequences: 1807
Number of extensions: 8573
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)