BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZD09FM1.SCF screened BAC_end
         (909 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1711                                                        1003   0.0  

>3x_Contig1711 
          Length = 15491

 Score = 1003 bits (506), Expect = 0.0
 Identities = 545/556 (98%), Gaps = 2/556 (0%)
 Strand = Plus / Minus

                                                                        
Query: 70   aacggtgttttcaccacaagccaaaccttgaagcagaaaaaggtagaaaacctaaaatga 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7885 aacggtgttttcaccacaagccaaaccttgaagcagaaaaaggtagaaaacctaaaatga 7826

                                                                        
Query: 130  tccaaaaaaactggagaattagaatgacctgaccagagtaataccaacctttgggtcctc 189
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7825 tccaaaaaaactggagaattagaaagacctgaccagagtaataccaacctttgggtcctc 7766

                                                                        
Query: 190  tgatgtgcatanatcntttcgacagtaaaggcaaagatatatgttttttttccttccaga 249
            ||||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7765 tgatgtgcaaatagcttttcgacagtaaaggcaaagatatatgttttttttccttccaga 7706

                                                                        
Query: 250  aatattagtcttggttctcttttttaatcgaaagcctttcctttactagtcttacttgca 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7705 aatattagtcttggttctcttttttaatcgaaagcctttcctttactagtcttacttgca 7646

                                                                        
Query: 310  tcatgaacgttgcgaggacaagactcataggtgccaaaaaaaaaccaaatacaactggca 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7645 tcatgaacgttgcgaggacaagactcataggtgccaaaaaaaaaccaaatacaactggca 7586

                                                                        
Query: 370  cttatataataatgggaaagtttaatgttaccaccagccagaacggaactttggctatgg 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7585 cttatataataatgggaaagtttaatgttaccaccagccagaacggaactttggctatgg 7526

                                                                        
Query: 430  ctactcagttcattcagctcagctcttgcagatcttttgatgccacctgcctggtgtttt 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7525 ctactcagttcattcagctcagctcttgcagatcttttgatgccacctgcctggtgtttt 7466

                                                                        
Query: 490  ttaagcaacatgggatgaataaggaacacatagtgaactcagtaactaacgagttttcac 549
            | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 7465 tcaagcaacatgggatgaataaggaacacatagtgaactcagtaactaaggagttttcac 7406

                                                                        
Query: 550  cataaccgacggcacgaaaaaaatttctttgtgccgtacgtaaagaacaatgtgtcatac 609
            |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 7405 cataaccgacggcacg-aagaaatttctttgtgccgtacgtaaagatcaatgtgtcatac 7347

                            
Query: 610  acctggttcgcttcac 625
            | ||||||||||||||
Sbjct: 7346 a-ctggttcgcttcac 7332


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6775
Number of Sequences: 1807
Number of extensions: 6775
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)