BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD09RM1.SCF screened BAC_end
(1084 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 898 0.0
>3x_Contig1806
Length = 53694
Score = 898 bits (453), Expect = 0.0
Identities = 510/523 (97%), Gaps = 7/523 (1%)
Strand = Plus / Minus
Query: 75 cttaaaacggttcaaaa-gaagtcctcggtacagacaaggtaagaaaacttactaatatc 133
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15718 cttaaaacggttcaaaatgaagtcctcggtacagacaaggtaagaaaacttactaatatc 15659
Query: 134 aattcacaaacctttaagatagtggctcttctgacagtaattcatttaattaccgttagt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15658 aattcacaaacctttaagatagtggctcttctgacagtaattcatttaattaccgttagt 15599
Query: 194 tttttggatgtacgaacatactcagtgcttgtcattagccttgtctccgtgttccattca 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15598 tttttggatgtacgaacatactcagtgcttgtcattagccttgtctccgtgttccattca 15539
Query: 254 gtgtattaccagagcacgatgaaactcctatggaggtatttgtggataaggcgatgttac 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15538 gtgtattaccagagcacgatgaaactcctatggaggtatttgtggataaggcgatgttac 15479
Query: 314 tattatatatgggacagcgtaccatcggaatccaaactggaaaccaactttcaacaatac 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15478 tattatatatgggacagcgtaccatcggaatccaaactggaaaccaactttcaacaatac 15419
Query: 374 aaggtgatttgtgagagtcaagtcattccattccctaaatctctacaaggcttgaagggc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15418 aaggtgatttgtgagagtcaagtcattccattccctaaatctctacaaggcttgaagggc 15359
Query: 434 caagagctacaggttcaactacaacatgttaatccttcatgatccaactaagattgatcc 493
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 15358 caagagctacaggttcaactacaa-atgttaatccttcaggatccaactaagattgatcc 15300
Query: 494 ataatccgattacgtacacgtcaagatcatcgaattcaacgttgatgaaaacgagaagaa 553
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 15299 agaatccgattacgtacacgtcaagatcatcgaatacaacgttgatgaaaacgag-agaa 15241
Query: 554 attggaaggccagaagggctggacccccaaaaattgctacctt 596
| |||||| || ||||||||||||| ||||||||||||||
Sbjct: 15240 aatggaag--caagagggctggacccc--aaaattgctacctt 15202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8912
Number of Sequences: 1807
Number of extensions: 8912
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 1084
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1068
effective length of database: 10,329,639
effective search space: 11032054452
effective search space used: 11032054452
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)