BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD10FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1078 0.0
>3x_Contig1803
Length = 52241
Score = 1078 bits (544), Expect = 0.0
Identities = 586/596 (98%), Gaps = 3/596 (0%)
Strand = Plus / Minus
Query: 85 aatgacaaactaaccttgttaaagaccgatcatccaaaattcagcactgtcatattgcag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16850 aatgacaaactaaccttgttaaagaccgatcatccaaaattcagcactgtcatattgcag 16791
Query: 145 gggctctgttcgtcgaatgtgcatcatgtgctctgccatgatgtttcttttttttcatta 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16790 gggctctgttcgtcgaatgtgcatcatgtgctctgccatgatgtttcttttttttcatta 16731
Query: 205 tatcgaggcgttttttgtgtgtttaaactggaaattatggtaaaaatatgtaaaagctat 264
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16730 tatcgaggcgtgttttg-gtgtttaaactggaaattagggtaaaaatatgtaaaagctat 16672
Query: 265 tcgaaaagtcacacttttttagcagaagacgataccaccaaaaggaaatgtcgataggtt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16671 tcgaaaagtcacacttttttagcagaagacgataccaccaaaaggaaatgtcgataggtt 16612
Query: 325 gttgctttacttaaaactagtttaattagtacatacaccagtttctcgcccaagttctct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16611 gttgctttacttaaaactagtttaattagtacatacaccagtttctcgcccaagttctct 16552
Query: 385 acatattgcgaatacaaatcttgtgctgaaagtgcgtatccctaactgctgagccttatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16551 acatattgcgaatacaaatcttgtgctgaaagtgcgtatccctaactgctgagccttatt 16492
Query: 445 tctcatattaaagtcatcggtaactagactgacaaaattaaatctctgagtactttgtcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16491 tctcatattaaagtcatcggtaactagactgacaaaattaaatctctgagtactttgtcc 16432
Query: 505 atcttcagatagaggtatgcagtccttacctttttctattgcatcattgtttaaaacatt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16431 atcttcagatagaggtatgcagtccttacctttttctattgcatcattgtttaaaacatt 16372
Query: 565 taacttattcttgtgctttggctatggcatcaatgacaaactcgtcaacatgggatttcc 624
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16371 aaactta-tcttgtgctttggctatggcatcaatgacaaactcgtcaacatgggatttcc 16313
Query: 625 acgtcatctgctttttgatcttcaagtgctctt-tagatgccctgctacattaccc 679
|||||||||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 16312 acgtcatctgctcttcgatctccaagtgctcttcaagatgccctgctacattaccc 16257
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8313
Number of Sequences: 1807
Number of extensions: 8313
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)