BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD10RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1385 1249 0.0
>3x_Contig1385
Length = 5361
Score = 1249 bits (630), Expect = 0.0
Identities = 689/702 (98%), Gaps = 5/702 (0%)
Strand = Plus / Plus
Query: 58 ggcttctttcaaagttggggcaacagcagaagatgcaatcactctaccaccattagtgta 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3932 ggcttctttcaaagttggggcaacagcagaagatgcaatcactctaccaccattagtgta 3991
Query: 118 cacttttccgttatcagatttcgtgccagcatggaaaatgtaggtatcagttggaatctt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3992 cacttttccgttatcagatttcgtgccagcatggaaaatgtaggtatcagttggaatctt 4051
Query: 178 cgaagaatcaaccgtaatctcgtctcccttcttgtatgactctgggtagccaccagcagc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4052 cgaagaatcaaccgtaatctcgtctcccttcttgtatgactctgggtagccaccagcagc 4111
Query: 238 taaaactacagtagtagcatagcagttgtccttgattttgatgtcaactgaatccaatct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4112 taaaactacagtagtagcatagcagttgtccttgattttgatgtcaactgaatccaatct 4171
Query: 298 atgttcagcagctgctaaaaagacttgagccaaatcggtgtcttcagtcaacaatggcaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4172 atgttcagcagctgctaaaaagacttgagccaaatcggtgtcttcagtcaacaatggcaa 4231
Query: 358 gactgtttgcgtttctgggtcaccaaatctaacattgtactctaataccttgggaccgtt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4232 gactgtttgcgtttctgggtcaccaaatctaacattgtactctaataccttgggaccgtt 4291
Query: 418 cttagtcaagatgataccagtaaacaagacaccgacaaatggcaatttgtcctttctcat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4292 cttagtcaagatgataccagtaaacaagacaccgacaaatggcaatttgtcctttctcat 4351
Query: 478 accatcaatacttggtttgacaatagtcttatcaatttgttccaacaactttggagtagc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4352 accatcaatacttggtttgacaatagtcttatcaatttgttccaacaactttggagtagc 4411
Query: 538 aacaggtgccggagcataagcacccataccaccagtgttcaaaccggtgtcattttcacc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4412 aacaggtgccggagcataagcacccataccaccagtgttcaaaccggtgtcattttcacc 4471
Query: 598 aattctcttatggtcttgggctggtggtaagttaaagtatgagttaccgtctgagattgg 657
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 4472 aattctcttatggtcttgggctggtggtaggttaaagtatgagtaaccgtctgagattgt 4531
Query: 658 caagatggagaatttcatctcccttccaa-aattctttaatgacaacgctttttaccagc 716
|||||||||| ||||||||| |||||||| ||||||| ||||||||||| ||||||||||
Sbjct: 4532 caagatggag-atttcatct-ccttccaagaattcttcaatgacaacgc-ttttaccagc 4588
Query: 717 gtcaccgaattggcttttccccatgatggatttttaaggctt 758
|||||||||||| |||| | ||||||| |||||| |||||||
Sbjct: 4589 gtcaccgaattgtctttccaccatgat-gattttcaaggctt 4629
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6394
Number of Sequences: 1807
Number of extensions: 6394
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)