BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD11FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1404 0.0
>3x_Contig1772
Length = 25851
Score = 1404 bits (708), Expect = 0.0
Identities = 784/804 (97%), Gaps = 4/804 (0%)
Strand = Plus / Minus
Query: 86 ttcaacattcgaaatccatggtgatcttgtccttggaagatatagaagtgagataaatga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5023 ttcaacattcgaaatccatggtgatcttgtccttggaagatatagaagtgagataaatga 4964
Query: 146 tactcgcaataattctattagccgcaataatgataatagcatgtctgaaagatcgcagaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4963 tactcgcaataattctattagccgcaataatgataatagcatgtctgaaagatcgcagaa 4904
Query: 206 ctcgttgaaatccactggaaaattgcaagtatttgctgataatgaagaagaactgcaaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4903 ctcgttgaaatccactggaaaattgcaagtatttgctgataatgaagaagaactgcaaaa 4844
Query: 266 tgataaatttatgttgaggcaggacctccctaccttgccaccatataaaacccgaaataa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4843 tgataaatttatgttgaggcaggacctccctaccttgccaccatataaaacccgaaataa 4784
Query: 326 agagaatcatacgccggccataccttttaaatcaggatctacgatagcgccattgaaaca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4783 agagaatcatacgccggccataccttttaaatcaggatctacgatagcgccattgaaaca 4724
Query: 386 atctaacagcttttcgcaaacagatttggataaaataccagtattcagagatgatctcgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4723 atctaacagcttttcgcaaacagatttggataaaataccagtattcagagatgatctcgg 4664
Query: 446 acgggctacgccggtttataaactgatagaagttcctggtcggaagccagaaaaaataca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4663 acgggctacgccggtttataaactgatagaagttcctggtcggaagccagaaaaaataca 4604
Query: 506 aacaaattttgaattactataccctacagcggatgaggagtattgtattgaagaagtttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4603 aacaaattttgaattactataccctacagcggatgaggagtattgtattgaagaagtttt 4544
Query: 566 ggcactagcaagaaactgctactataaggaaaaaaattccagtgtcaaacgacatttgga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4543 ggcactagcaagaaactgctactataaggaaaaaaattccagtgtcaaacgacatttgga 4484
Query: 626 agaaaataatcacgagaattccaaacccatgaagaaaagaggtctgcaaccaaaatctcc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483 agaaaataatcacgagaattccaaacccatgaagaaaagaggtctgcaaccaaaatctcc 4424
Query: 686 cgagtatcataaggtaactacaacttcaatccttcctttaaaa-gagacattgaaccaga 744
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4423 cgagtatcataaggtaactacaacttcaatccttcctttaaaaggagacattgaaccaga 4364
Query: 745 tggtttaaccggacattctgattggtagttcaaagtcttcgacagtaactattgttct-c 803
||||||||||||||||||||| ||||| ||||||||| |||||||||||| |||||| |
Sbjct: 4363 tggtttaaccggacattctga-tggtaagtcaaagtctccgacagtaacta-tgttctcc 4306
Query: 804 aaagatgccatgaattgaatatttctcatgttcaatcaaagtttttatgacctgaaaaat 863
||||||||||||||| | ||| | |||||||||||||||| | ||||| ||||||||
Sbjct: 4305 aaagatgccatgaatgaagtatattcaatgttcaatcaaagttatcatgacatgaaaaat 4246
Query: 864 tactttgaccatgacaatccaact 887
|||| |||||||||| || |||||
Sbjct: 4245 tactctgaccatgacgatacaact 4222
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7499
Number of Sequences: 1807
Number of extensions: 7499
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)