BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD11RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1443 0.0
3x_Contig950 139 1e-32
>3x_Contig1739
Length = 22061
Score = 1443 bits (728), Expect = 0.0
Identities = 772/780 (98%), Gaps = 5/780 (0%)
Strand = Plus / Minus
Query: 48 gcttaaagactaactcattcaaaaagattcccgcttgaggaggaagtaagtgaaaaatgt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21567 gcttaaagactaactcattcaaaaagattcccgcttgaggaggaagtaagtgaaaaatgt 21508
Query: 108 tgaaaatactgcagatgatcttagtcggcgtttgctgagtgatttcctttccgaaaagag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21507 tgaaaatactgcagatgatcttagtcggcgtttgctgagtgatttcctttccgaaaagag 21448
Query: 168 tatccaaaacctcgatttggcaccatgcatctaagtgatcggataactttttaccgattt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21447 tatccaaaacctcgatttggcaccatgcatctaagtgatcggataactttttaccgattt 21388
Query: 228 ccactttgaagtacgcgataaggagctccaagagttttgctagtgcctccaacccgggta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21387 ccactttgaagtacgcgataaggagctccaagagttttgctagtgcctccaacccgggta 21328
Query: 288 cggttagtttctgatggtcagatagattcatcaacattggtttcaacccattttgcaata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21327 cggttagtttctgatggtcagatagattcatcaacattggtttcaacccattttgcaata 21268
Query: 348 gctccttaggtaatttagaattttctgctaaaactattttcagcccctcatacgtcgctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21267 gctccttaggtaatttagaattttctgctaaaactattttcagcccctcatacgtcgctt 21208
Query: 408 caataatctctggagaaggttttaacatggttttgaagaatacggctagtacctttattc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21207 caataatctctggagaaggttttaacatggttttgaagaatacggctagtacctttattc 21148
Query: 468 ttatagatccattctgcgcgttagcgaattctgggttcaataaggcttgtgcaagtaacc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21147 ttatagatccattctgcgcgttagcgaattctgggttcaataaggcttgtgcaagtaacc 21088
Query: 528 tgatacacacaactcttaacttgattaactgttgggatgtttggtattcggtaattcgtt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21087 tgatacacacaactcttaacttgattaactgttgggatgtttggtattcggtaattcgtt 21028
Query: 588 gggtgctggctagtgatatgtcgtcggcatccactaaggcaattgattcgtgtaaaagac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21027 gggtgctggctagtgatatgtcgtcggcatccactaaggcaattgattcgtgtaaaagac 20968
Query: 648 ggaatagctcctcatcgaatttcaaaaaagagttttgaagacgtaaacaatatatcacgg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20967 ggaatagctcctcatcgaatttcaaaaaagagttttgaagacgtaaacaatatatcacgg 20908
Query: 708 cgtctacattaccaatttgcatcgaaaacggttatgctcttcagggtttagcaaagattg 767
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 20907 cgtctacattaccaatttgcatcgaaaacggtaatgctctcaagggtttagcaaagatt- 20849
Query: 768 ggggaaagtagaaagtttttgggcatggttcaattaaagttaaccaccggggattttggt 827
|||||||||||||||||||| |||||||||| ||||||| |||||||| |||||||||||
Sbjct: 20848 ggggaaagtagaaagttttt-ggcatggttc-attaaag-taaccacc-gggattttggt 20793
>3x_Contig950
Length = 3159
Score = 139 bits (70), Expect = 1e-32
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 48 gcttaaagactaactcattcaaaaagattcccgcttgaggaggaagtaagtgaaaaatgt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2790 gcttaaagactaactcattcaaaaagattcccgcttgaggaggaagtaagtgaaaaatgt 2849
Query: 108 tgaaaatact 117
||||||||||
Sbjct: 2850 tgaaaatact 2859
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6409
Number of Sequences: 1807
Number of extensions: 6409
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)