BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD12FM1.SCF screened BAC_end
(871 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig602 999 0.0
>3x_Contig602
Length = 2648
Score = 999 bits (504), Expect = 0.0
Identities = 579/596 (97%), Gaps = 6/596 (1%)
Strand = Plus / Minus
Query: 41 atccagaatatcggccactctatcagcagaacatagcaaatgatagcatgaaactctttg 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 atccagaatatcggccactctatcagcagaacatagcaaatgatagcatgaaactctttg 630
Query: 101 tactgctttgacaccgaacgactcgcaccagtcagaaacatctattcttttctttggcgc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tactgctttgacaccgaacgactcgcaccagtcagaaacatctattcttttctttggcgc 570
Query: 161 tagatatttgaatgatctaaaatcattcggaccatatacgttataacctcttgtagttaa 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tagatatttgaatgatctaaaatcattcggaccatatacgttataacctcttgtagttaa 510
Query: 221 tctttcattgtcatctcgaaacacacaacccgtgtcccaagattcgatagtctccgtcag 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tctttcattgtcatctcgaaacacacaacccgtgtcccaagattcgatagtctccgtcag 450
Query: 281 ttgcttagggaaatccattccacgatcaacaatccatagcagttccttgcgcagagatag 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttgcttagggaaatccattccacgatcaacaatccatagcagttccttgcgcagagatag 390
Query: 341 gtcagtacagcatattgatgcgcctaacatggcatacgtcccacctccacctagtacgtc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtcagtacagcatattgatgcgcctaacatggcatacgtcccacctccacctagtacgtc 330
Query: 401 gtaatagtgcgatgacgccgtctcgatctcatcgatgataagcatcccattggtagtaag 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtaatagtgcgatgacgccgtctcgatctcatcgatgataagcatcccattggtagtaag 270
Query: 461 aagacccatattggcaatgactgctttattccgttttacacctgaaaattatagtgatgg 520
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 269 aagacccatattggcaatgactgcttaattccg-tttacacctgaaaattatagtgatgg 211
Query: 521 gcgggtggtcttattatactgcagttgaccatgtatatttctttataaagtttttttata 580
|||| ||||| ||||||||||||||||||||||||||||| |||| | || ||||||
Sbjct: 210 gcggtaggtctcattatactgcagttgaccatgtatatttc-ttatcagagttctttata 152
Query: 581 acttcgaaatataatcttttgataatgttctcgtttcttatctcttgagcatcaac 636
||||||||||| ||| |||||||||||| ||| |||||||||| |||||||||||
Sbjct: 151 acttcgaaata-aattctttgataatgtt-tcg-ttcttatctc-tgagcatcaac 100
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,537
Number of Sequences: 1807
Number of extensions: 13537
Number of successful extensions: 137
Number of sequences better than 1.0e-20: 1
length of query: 871
length of database: 10,358,551
effective HSP length: 16
effective length of query: 855
effective length of database: 10,329,639
effective search space: 8831841345
effective search space used: 8831841345
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)