BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZD12RM1.SCF screened BAC_end
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 866 0.0
>3x_Contig1802
Length = 45229
Score = 866 bits (437), Expect = 0.0
Identities = 510/531 (96%), Gaps = 3/531 (0%)
Strand = Plus / Minus
Query: 69 gcttaattggaaacctttgtataccgatattgaaattgctttgttgcttcaatattgtat 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11717 gcttaattggaaacctttgtataccgatattgaaattgctttgttgcttcaatattgtat 11658
Query: 129 atcgctttccaatgatcaatcttttcaattttttgatacttcgcatcacagtttcgaaaa 188
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11657 at-gctttccaatgatcaatcttttcaattttttgatacttcgcatcacagtttcgaaaa 11599
Query: 189 atttttagatctgctcgttaagagtgatgtactacacgtgacctaactattatttttttt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 11598 atttttagatctgctcgttaagagtgatgtactacacgtgacctaactattataattaag 11539
Query: 249 tttcattacttactactaatggccctcaggtattaagctgcagagatactaactaccagt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11538 tttcattacttactactaatggccctcaggtattaagctgcagagatactaactaccagt 11479
Query: 309 aacccatactagatgcgatcgtgctaagaagcgccagaagattgattttttagcctcgtt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11478 aacccatactagatgcgatcgtgctaagaagcgccagaagattgattttttagcctcgtt 11419
Query: 369 ttgattgttttgatgtgtgcgaatctgcgagaccatgtagaacagngttctgacgatacg 428
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 11418 ttgattgttttgatgtgtgcgaatctgcgagaccatgtagaacagtgttctgacgatacg 11359
Query: 429 gactcgtgccaaatttgngcgaatgtgtttgcgacagtacataaatgcctgacatacgct 488
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11358 gactcgtgccaaatttgtgcgaatgtgtttgcgacagtacataaatgcctgacatacgc- 11300
Query: 489 tgcgaggcgctgcctattcatgattttgaagtgggatgtaaaaaatataccaagaacctt 548
||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||| |
Sbjct: 11299 tgcgaggcgctgcctatgcatgattttgaagtgggatgtagagaatataccaggaacttc 11240
Query: 549 ttttgctttgtaaattttcacccttatagaattccctcacaaagacttttt 599
||||||| ||||||| |||| ||||||||||||| |||||| || ||||||
Sbjct: 11239 ttttgctctgtaaatcttca-ccttatagaattcactcacagagtcttttt 11190
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,729
Number of Sequences: 1807
Number of extensions: 12729
Number of successful extensions: 122
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)