BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE01FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 1181 0.0
>3x_Contig1543
Length = 9648
Score = 1181 bits (596), Expect = 0.0
Identities = 612/616 (99%), Gaps = 1/616 (0%)
Strand = Plus / Minus
Query: 86 tagttatcctcagcagtatgatccgtgtaactgacaaactcttgatccttcccaacgaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4108 tagttatcctcagcagtatgatccgtgtaactgacaaactcttgatccttcccaacgaca 4049
Query: 146 gaacgcggtatcgtcatcatcggaagtgaagccccatgtcctaatgtgttcctatccagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4048 gaacgcggtatcgtcatcatcggaagtgaagccccatgtcctaatgtgttcctatccagt 3989
Query: 206 gacaattccagatcgaaatccatatcatcttgatctcgatctacaagatcatatatcgtg 265
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3988 gacaattccagatcgaaatccatatcatcttgatctcgatctagaagatcatatatcgtg 3929
Query: 266 gaagacgtactacttccggtgcttcgatccaaaggttgtaaaagaggggatctgatgaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3928 gaagacgtactacttccggtgcttcgatccaaaggttgtaaaagaggggatctgatgaga 3869
Query: 326 gaagcaggagtaccgaccaactcattggttaactttaaattctcaatggtcattctatca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3868 gaagcaggagtaccgaccaactcattggttaactttaaattctcaatggtcattctatca 3809
Query: 386 ttttcttgacattgagaagaacagtataacctgtcattatccaattgagcatcgcaatta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3808 ttttcttgacattgagaagaacagtataacctgtcattatccaattgagcatcgcaatta 3749
Query: 446 ccacgttcaatcaattggccacaaacggtacaataatcgttgaatgctgacatcgtaaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3748 ccacgttcaatcaattggccacaaacggtacaataatcgttgaatgctgacatcgtaaac 3689
Query: 506 tagtaggtattgcgcagacaggtatcctcggcttcactggcttgtgaaaaggttttctct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3688 tagtaggtattgcgcagacaggtatcctcggcttcactggcttgtgaaaaggttttctct 3629
Query: 566 ttccctatctatctcgtgattacacttgaaatcccctcagctactattttcaccatatac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3628 ttccctatctatctcgtgattacacttgaaatcccctcagctactattttcaccatatac 3569
Query: 626 ccaatatatatattgcttatatatatgtattatataaaaagattatggacattgtgccct 685
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 3568 ccaatatatatattgcttatatatatgtattatataaaaagattatggacatcgtg-cct 3510
Query: 686 taatcttaactaaagg 701
|||||| |||||||||
Sbjct: 3509 taatctcaactaaagg 3494
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6784
Number of Sequences: 1807
Number of extensions: 6784
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)