BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE01RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig919 952 0.0
3x_Contig1695 359 6e-99
>3x_Contig919
Length = 4576
Score = 952 bits (480), Expect = 0.0
Identities = 504/508 (99%), Gaps = 3/508 (0%)
Strand = Plus / Minus
Query: 78 ctttgcagggacaagctacagcaaaaagctcgactaaaaatgtcgaagttccggt-gaag 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 506 ctttgcagggacaagctacagcaaaaagctcgactaaaaatgtcgaagttccggttgaag 447
Query: 137 ccagggatgtctatcttatccacagattctaatacgcaagcgtatttcgtgaacgttaca 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccagggatgtctatcttatccacagattctaatacgcaagcgtatttcgtgaacgttaca 387
Query: 197 attggagatgaaatatacccattagttgtagattcgggatctgcttacctttgggtttat 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attggagatgaaatatacccattagttgtagattcgggatctgcttacctttgggtttat 327
Query: 257 gggagctcatgcacatcaaagtcgtgcacctcaaacaaattgttttctacagataacgtc 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gggagctcatgcacatcaaagtcgtgcacctcaaacaaattgttttctacagataacgtc 267
Query: 317 aagagagcagccgatgaatctactttttcgttgatctacagctctggaactgcctctggt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagagagcagccgatgaatctactttttcgttgatctacagctctggaactgcctctggt 207
Query: 377 gacgtctatgaggatagaattattgtgaataagttggcaaccactcagaattttaccttt 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gacgtctatgaggatagaattattgtgaataagttggcaaccactcagaattttaccttt 147
Query: 437 ggtgttgcaaatgaggtgcccgatatttttgagaattatccagttagtggtatctttggg 496
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ggtgttgcaaatgaggtgtccgatatttttgagaattatccagttagtggtatctttggg 87
Query: 497 ttgccatccaataactcggacaacatagagagtatcatatcagttttaagcgaatccaac 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 86 ttgccatccaataactcggacaacatagagagtatcatatcagttttaagcgaat-caac 28
Query: 557 gccatatccatggagaaattctcactga 584
|||||||||||||||||| |||||||||
Sbjct: 27 gccatatccatggagaaa-tctcactga 1
>3x_Contig1695
Length = 14630
Score = 359 bits (181), Expect = 6e-99
Identities = 240/257 (93%), Gaps = 2/257 (0%)
Strand = Plus / Plus
Query: 586 tattggcgctcttaattcaaaagataacacttcatcagatgattctgccttacaagctcc 645
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 3 tattggcgctcttaattcaaaagataacactacatcagaggattctgccttacaagctcc 62
Query: 646 tttgacggaaaataaagggcttgtttattattggcgatttattagaggatttgtacacct 705
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
Sbjct: 63 tttgacggaaaataaagggct-gtttattattggcgatttagtagaggatttgtacac-t 120
Query: 706 ggtgatattcattacgcttcattgataacatatgaaaaccattattggcagttgaaaatt 765
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121 ggtgatattcattacgcttcattgataacaaatgaaaaccattattggcagttgaaaatt 180
Query: 766 gatagtgtttacggttattcacaagctgtgaattttttgactttggaggctgtgattgga 825
||||||||||||| ||||||||||||||||||| | ||||| |||||| |||| ||||
Sbjct: 181 gatagtgtttacgtcaattcacaagctgtgaatttctcgacttcggaggccgtgactgga 240
Query: 826 tcactattttcttacat 842
|||| || ||| |||||
Sbjct: 241 tcacaatcttcatacat 257
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5972
Number of Sequences: 1807
Number of extensions: 5972
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)