BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE02FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1624 1005 0.0
3x_Contig837 147 5e-35
>3x_Contig1624
Length = 12551
Score = 1005 bits (507), Expect = 0.0
Identities = 539/546 (98%), Gaps = 4/546 (0%)
Strand = Plus / Minus
Query: 251 tactgtgcagtacccccaaaaaaaaagatgcgtttacaaccaacctagttcaatgccgtc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12528 tactgtgcagtacccccaaaaaaaaagatgcgtttacaaccaacctagttcaatgccgtc 12469
Query: 311 gtgtctatactatatacaagttgcttaattatcgtttatagcaattgtcatctttaaaat 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12468 gtgtctatactatatacaagttgcttaattatcgtttatagcaattgtcatctttaaaat 12409
Query: 371 ggtgcacagagaaaacacaaacagcattttgcagctggaattcaccaacgatcgcgcgta 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12408 ggtgcacagagaaaacacaaacagcattttgcagctggaattcaccaacgatcgcgcgta 12349
Query: 431 tgaatagtcttaacttcgctagggagaaaaacagccagtgccaggaatagggccagagcc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12348 tgaatagtcttaacttcgctagggagaaaaacagccagtgccaggaatagggccagagcc 12289
Query: 491 aggtcctgtgtttgcactcatgctacggcctgatttctttattgatcgaacacttcctaa 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12288 aggtcctgtgtttgcactcatgctacggcctgatttctttattgatcgaacacttcctaa 12229
Query: 551 taaggaaaaaggtaaacaactatgcatatttacgttttaagaaaaatgtaaataaaccga 610
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 12228 taaggaaaaaggtaaacaactatgcatatttacgttttaggaaaaatgtaaataaaccga 12169
Query: 611 tggacttttcacaaaagctcatcgctttgtaatttggtgctacctttctgacaaagaagc 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12168 tggacttttcacaaaagctcatcgctttgtaatttggtgctacctttctgacaaagaagc 12109
Query: 671 atcaactgactatatgagcaactgagcggattggggggatagggcattactgcgcatact 730
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 12108 atcaactgactatatgagcaactgagcggattggggggatagggcatcactgcgcatact 12049
Query: 731 ccattgcagtattccttttgggtactccatgctttgtggttacattttttctttttggtt 790
||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 12048 ccattgcagtattcc-tttgggtactccatgc-ttgtggttacattttt--cttttggtt 11993
Query: 791 attatt 796
||||||
Sbjct: 11992 attatt 11987
>3x_Contig837
Length = 3290
Score = 147 bits (74), Expect = 5e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 87 tgccaaaggaaacgcaacaatggatgtcgagtcagcacccgatgaagcgtatggcaacaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3217 tgccaaaggaaacgcaacaatggatgtcgagtcagcacccgatgaagcgtatggcaacaa 3276
Query: 147 tgacagaagtttcg 160
||||||||||||||
Sbjct: 3277 tgacagaagtttcg 3290
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6739
Number of Sequences: 1807
Number of extensions: 6739
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 2
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)