BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZE02RM1.SCF screened BAC_end
         (894 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1386                                                         987   0.0  

>3x_Contig1386 
          Length = 5452

 Score =  987 bits (498), Expect = 0.0
 Identities = 527/534 (98%), Gaps = 2/534 (0%)
 Strand = Plus / Minus

                                                                        
Query: 358  atgtgatgaatgtatgaagatattaattaaacggtattttaataaaggaaaaaagggtct 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5452 atgtgatgaatgtatgaagatattaattaaacggtattttaataaaggaaaaaagggtct 5393

                                                                        
Query: 418  cgggacaaaaaaaaaaaaaaggaaggtagggaaaataaaggtgagaagaaccgattattc 477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5392 cgggacaaaaaaaaaaaaaaggaaggtagggaaaataaaggtgagaagaaccgattattc 5333

                                                                        
Query: 478  ggcaggtattaggtggtcattgaatactctctttctctctctcattaatcatcggataac 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5332 ggcaggtattaggtggtcattgaatactctctttctctctctcattaatcatcggataac 5273

                                                                        
Query: 538  atgtcgtttttagtacttttttcatttttatttcgactttttctttgacaaaaggtttgt 597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5272 atgtcgtttttagtacttttttcatttttatttcgactttttctttgacaaaaggtttgt 5213

                                                                        
Query: 598  atcgaagtcagcattgcttaaagttccagtttttaaaggcttttttacgtttaaagttcg 657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5212 atcgaagtcagcattgcttaaagttccagtttttaaaggcttttttacgtttaaagttcg 5153

                                                                        
Query: 658  attaaaggtaagatttaaattttaattttaagaaactgtcaactaaatgaagacactcaa 717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5152 attaaaggtaagatttaaattttaattttaagaaactgtcaactaaatgaagacactcaa 5093

                                                                        
Query: 718  ctcttggaagaaaggaagggaaactgtaccagtgaagtagaatagaatatagttttgtgt 777
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5092 ctcttggaagaaaggaagggaaactgtaccagtgaagtagaatagaatatag-tttgtgt 5034

                                                                        
Query: 778  tgtgggaatttgaaaaaaaaaaaaggagggccgagagaaagagggagagacaatggccaa 837
            ||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 5033 tgt-ggaatttgaaaaaaaaaaaaggaagggcgagagaaagagggagagacaatggccaa 4975

                                                                  
Query: 838  ttataatttaacggctttggtgttgaaattatagtaagtagcagcggtaaagta 891
            ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct: 4974 ttataatttaacggctttgttgttgtaataatagtaagtagcagcggtaaagta 4921


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,241
Number of Sequences: 1807
Number of extensions: 23241
Number of successful extensions: 480
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)