BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE03FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1378 0.0
>3x_Contig1507
Length = 11359
Score = 1378 bits (695), Expect = 0.0
Identities = 778/799 (97%), Gaps = 5/799 (0%)
Strand = Plus / Minus
Query: 86 tcagatcaaacaaaccgcgaacctcatatcatgttgtagtttttttttgagaatatatta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5483 tcagatcaaacaaaccgcgaacctcatatcatgttgtagtttttttttgagaatatatta 5424
Query: 146 aagagaatagaaggtggaacaagtgagggctgtaccattcttgtggaaccttttaacctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5423 aagagaatagaaggtggaacaagtgagggctgtaccattcttgtggaaccttttaacctt 5364
Query: 206 aattcggtgcattttttgattttcatcttgaataatagtgttattctcaatcgaaacaaa 265
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5363 aattcggtgcacagcttgattttcatcttgaataatagtgttattctcaatcgaaacaaa 5304
Query: 266 ctctcatgcaggagagataaaatcattctcaccaaaataataaagtggttttcctattca 325
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5303 ctctcatgcaggagagataaaatcattctcaccaaaataagaaagtggttttcctattca 5244
Query: 326 attgatttaatgttcaccgcccttgtggtgtctcaaatggaagtagtattccatagagta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5243 attgatttaatgttcaccgcccttgtggtgtctcaaatggaagtagtattccatagagta 5184
Query: 386 acccaatgtcaagataccaatggccaaatgcaatagaggcttaccagaggcattttcacc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5183 acccaatgtcaagataccaatggccaaatgcaatagaggcttaccagaggcattttcacc 5124
Query: 446 atcaaaaaacttggccttgtatctaccgatcaaaccagatggcttgacagcagcagcttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5123 atcaaaaaacttggccttgtatctaccgatcaaaccagatggcttgacagcagcagcttc 5064
Query: 506 accttgtggcaaggacttatagaaggaaacgacattagcaatacgcttagcatttggagc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063 accttgtggcaaggacttatagaaggaaacgacattagcaatacgcttagcatttggagc 5004
Query: 566 agagcccaagttctgtgatcaaatagaagttcaaatgaaaccaaaggtttggaaatcatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5003 agagcccaagttctgtgatcaaatagaagttcaaatgaaaccaaaggtttggaaatcatt 4944
Query: 626 tatatatcatgttagtaaaatggcataaagaaagtaaccaaaatcttggattgattgagg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 tatatatcatgttagtaaaatggcataaagaaagtaaccaaaatcttggattgattgagg 4884
Query: 686 atgaaaatagaaag-attgaaagctagcatttttctgattgg-actgtttacagttaaat 743
|||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct: 4883 atgaaaatagaaagtattgaaggctagcatttttctgattggaactgtttacagttcaat 4824
Query: 744 tggctgtttttttt-acatggaacttccaaaaacatgacaccctattggtgaggtgcttg 802
|||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct: 4823 tggctgttttttttaacatggtactcccaaaaacatgacaccctattggtgaggtgctgg 4764
Query: 803 ttgaaatagggtcaaaatttattgtagtttccaagtacttttcaacattaaggcatttac 862
| |||||||||||||||| ||||||||||||||||||| | |||||| ||| ||||||||
Sbjct: 4763 tggaaatagggtcaaaatatattgtagtttccaagtac-tctcaacaataaagcatttac 4705
Query: 863 ttcgtaaatagcatgtacc 881
| ||| |||||||||||||
Sbjct: 4704 tacgt-aatagcatgtacc 4687
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,575
Number of Sequences: 1807
Number of extensions: 13575
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)