BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE03RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig868 1229 0.0
>3x_Contig868
Length = 3693
Score = 1229 bits (620), Expect = 0.0
Identities = 680/695 (97%), Gaps = 5/695 (0%)
Strand = Plus / Plus
Query: 191 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 69
Query: 251 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 129
Query: 311 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaacacc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaacacc 189
Query: 371 atgcaaattgttttattccttcaaatttcattataacttttttcgtttgtttaaacttgt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 atgcaaattgttttattccttcaaatttcattataacttttttcgtttgtttaaacttgt 249
Query: 431 caaaaatttcatccaaaagatgactttatgggtcacgtgaacacatatcatctcgttaat 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 caaaaatttcatccaaaagatgactttatgggtcacgtgaacacatatcatctcgttaat 309
Query: 491 aatgattagcggtttttctcattgaacaatttgcagcaggatcaagctcatctcatctca 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aatgattagcggtttttctcattgaacaatttgcagcaggatcaagctcatctcatctca 369
Query: 551 tctcattgtaccgggctttaaagttatggaaatgataagtgaagctgaatttcggttcag 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctcattgtaccgggctttaaagttatggaaatgataagtgaagctgaatttcggttcag 429
Query: 611 ttggtagtgtgaattttcacggtgaatcaacactaaacgatagatcgatgattacaaaac 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttggtagtgtgaattttcacggtgaatcaacactaaacgatagatcgatgattacaaaac 489
Query: 671 gggtctatgttggttctgtgaccagtaatcaggatgattgttttgcagaattgtatgcca 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gggtctatgttggttctgtgaccagtaatcaggatgattgttttgcagaattgtatgcca 549
Query: 731 gatttctgaaatttggtaaagtagttgatgaatcgaaatcggtcgaacaacatgatgcct 790
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 550 gatttctgaaatttggtaaagtagttgatgaatcgaaatcgttcgaacaacatgatgcct 609
Query: 791 ttcggtacccttaacatggagtttgaagacgcttcacagtttggaaaaaagaaaatctta 850
| |||| |||||||||||||||||| ||||||||||||||| || || | || || ||
Sbjct: 610 tcgggta-ccttaacatggagtttgaggacgcttcacagttt-gagaagatgaagtc-ta 666
Query: 851 tttttaacagggttaaattccaaaaggaaatactc 885
||||||||||||||||||| |||||||||||||
Sbjct: 667 gttttaacagggttaaattc--aaaggaaatactc 699
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8352
Number of Sequences: 1807
Number of extensions: 8352
Number of successful extensions: 440
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)