BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE05FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 1308 0.0
>3x_Contig1607
Length = 10159
Score = 1308 bits (660), Expect = 0.0
Identities = 720/731 (98%), Gaps = 8/731 (1%)
Strand = Plus / Minus
Query: 85 taaaccggtattcagaataataaaggaaacagtaagtaatggcagttatttcagtgcgtg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6492 taaaccggtattcagaataataaaggaaacagtaagtaatggcagttatttcagtgcgtg 6433
Query: 145 ggcttgatgccgtcgtgtctaaggatgaatcgttgggggaggaagttgtagaggggaata 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6432 ggcttgatgccgtcgtgtctaaggatgaatcgttgggggaggaagttgtagaggggaata 6373
Query: 205 ttgatgcttgtaaggaatcagtgaggtctcatgagcatgatgacaatgccagttacgatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6372 ttgatgcttgtaaggaatcagtgaggtctcatgagcatgatgacaatgccagttacgatg 6313
Query: 265 aaccaccaagcttgactcatccgatggagtcacgtgttgtgaggaaaatggatttatact 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6312 aaccaccaagcttgactcatccgatggagtcacgtgttgtgaggaaaatggatttatact 6253
Query: 325 tggttcccttgatgtgtatgctatatttcttgtccaatttggataagtctaacattggta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6252 tggttcccttgatgtgtatgctatatttcttgtccaatttggataagtctaacattggta 6193
Query: 385 acgctgaagtcgctggtctctctgagtctttgaatttaacaggtaaccagtacggtaact 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6192 acgctgaagtcgctggtctctctgagtctttgaatttaacaggtaaccagtacggtaact 6133
Query: 445 gtgtgactgtgttctatgcgacgtatatcttctttgatccaattggtgctaacttgttga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6132 gtgtgactgtgttctatgcgacgtatatcttctttgatccaattggtgctaacttgttga 6073
Query: 505 aaattattgggcccaagtatatgatgaccggatgtttgatttgctttggtgccatttctt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6072 aaattattgggcccaagtatatgatgaccggatgtttgatttgctttggtgccatttctt 6013
Query: 565 tggggacagcttgggtaaaagattatggacatttactcttggttagagttctattgggag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6012 tggggacagcttgggtaaaagattatggacatttactcttggttagagttctattgggag 5953
Query: 625 catttgaggccaccatttatccatcaattaacatgtatttgtcaatctgctatcgtcgtg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5952 catttgaggccaccatttatccatcaattaacatgtatttgtcaatctgctatcgtcgtg 5893
Query: 685 aacagtatgcgattagattcgcatggggttttctttgctgcatgtattatctccctcgtt 744
|||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct: 5892 aacagtatgcgattagattcgcat-gggttttctttgctgcatgta-tatcttcctcgtt 5835
Query: 745 tggtggggtttgatctcgtacggggtgttcaaagattaatgggttctttggaatgctctg 804
||||||| |||||||||||| || ||||||||||||||| |||||||| ||||||| ||
Sbjct: 5834 tggtggg--ttgatctcgtac-ggttgttcaaagattaat-ggttcttt-gaatgct-tg 5781
Query: 805 ccaatacattt 815
||||||||||
Sbjct: 5780 gcaatacattt 5770
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5896
Number of Sequences: 1807
Number of extensions: 5896
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)