BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE05RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1671 0.0
>3x_Contig1770
Length = 29267
Score = 1671 bits (843), Expect = 0.0
Identities = 845/846 (99%)
Strand = Plus / Minus
Query: 45 gctttaagctcttgatgtttggctttaatttcatgttggcagaattatcaacaaaaattg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10013 gctttaagctcttgatgtttggctttaatttcatgttggcagaattatcaacaaaaattg 9954
Query: 105 accttaaatgggataaaatggtcgattaataggtcagcgaaccacttattgaaacgaaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9953 accttaaatgggataaaatggtcgattaataggtcagcgaaccacttattgaaacgaaaa 9894
Query: 165 gccagtaaatgagatgagtgcatgctacacattgcatataaccttgttaattcgagtgaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9893 gccagtaaatgagatgagtgcatgctacacattgcatataaccttgttaattcgagtgaa 9834
Query: 225 gtggccaatctgggccatgatagtggtttatgttacatggattgcactgaaattacgtta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9833 gtggccaatctgggccatgatagtggtttatgttacatggattgcactgaaattacgtta 9774
Query: 285 cccggtctctggattgatccctcaatatcaaaatctaaacaaagttgaagagctgatatg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9773 cccggtctctggattgatccctcaatatcaaaatctaaacaaagttgaagagctgatatg 9714
Query: 345 tacatttcagtaaagagtgctcgaagtcataaaaagggtggttaaataggttcattcaac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9713 tacatttcagtaaagagtgctcgaagtcataaaaagggtggttaaataggttcattcaac 9654
Query: 405 tctgtgagccaatatttctgtcaataacagaattctaatctgattccagtcataatacac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9653 tctgtgagccaatatttctgtcaataacagaattctaatctgattccagtcataatacac 9594
Query: 465 ccatttttgcgaaatgcctagggttgctggaagctcaggaagcaagaaacaaggcaaggc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9593 ccatttttgcgaaatgcctagggttgctggaagctcaggaagcaagaaacaaggcaaggc 9534
Query: 525 aaagaaggatttcagcaatgaagatgatgcgtataacgctctatttggtggtgagtttgg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9533 aaagaaggatttcagcaatgaagatgatgcgtataacgctctatttggtggtgagtttgg 9474
Query: 585 ggcattagatattagtaattatactagtggtggcggcaatggtaagcaagatgaaacaga 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9473 ggcattagatattagtaattatactagtggtggcggcaatggtaagcaagatgaaacaga 9414
Query: 645 gcatctgccgaatgctattgattntgaagatgaagatgaattggcagatgaagaattacc 704
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9413 gcatctgccgaatgctattgattttgaagatgaagatgaattggcagatgaagaattacc 9354
Query: 705 ggaggaagaagagccatcccattctccgaacaggcataatgaagggtcgtttcagcggag 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9353 ggaggaagaagagccatcccattctccgaacaggcataatgaagggtcgtttcagcggag 9294
Query: 765 tctgactgaagacgacgaatatatgactctgatggaccatggtgatgtgatgcatgaagt 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9293 tctgactgaagacgacgaatatatgactctgatggaccatggtgatgtgatgcatgaagt 9234
Query: 825 tgacgctgctggatttgaagtacaaggtaataatgcattgttcatggagagcacatatca 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9233 tgacgctgctggatttgaagtacaaggtaataatgcattgttcatggagagcacatatca 9174
Query: 885 gtcatt 890
||||||
Sbjct: 9173 gtcatt 9168
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6612
Number of Sequences: 1807
Number of extensions: 6612
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)