BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE07FM1.SCF screened BAC_end
(871 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1235 0.0
>3x_Contig1451
Length = 8346
Score = 1235 bits (623), Expect = 0.0
Identities = 716/742 (96%), Gaps = 4/742 (0%)
Strand = Plus / Plus
Query: 69 cagaagttattgataaaggtcgcgaacttgacctgcaagatagatttattaatgcaaaga 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3605 cagaagttattgataaaggtcgcgaacttgacctgcaagatagatttattaatgcaaaga 3664
Query: 129 ctgtaaaatacatgttaagagctgataaaattgatgaggctactaagatcgtgtcattgt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3665 ctgtaaaatacatgttaagagctgataaaattgatgaggctactaagatcgtgtcattgt 3724
Query: 189 ttaccaaaaatgactaanctccaaatggtgtaccagatttacacctcctagaagcctctt 248
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3725 ttaccaaaaacgaccaatctccaaatggtgtaccagatttacacctcctagaagcctctt 3784
Query: 249 ggttcattatcgaacaagctgagagcttcttcagattgtataaaaaatcttgcaaggaat 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3785 ggttcattatcgaacaagctgagagcttcttcagattgtataaaaaatcttgcaaggaat 3844
Query: 309 taatcggcttgaagaataaagatataactgcacttaccgttgatgagatagaatctcatg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3845 taatcggcttgaagaataaagatataactgcacttaccgttgatgagatagaatctcatg 3904
Query: 369 gaaaacttctaaaagaattggaattcaatgttaataagtttgagggcctttctttaaaac 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3905 gaaaacttctaaaagaattggaattcaatgttaataagtttgagggcctttctttaaaac 3964
Query: 429 gttatatggcaattcctaagatttacaagcaattcgaggatgatcaattagatttccact 488
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3965 gttatatggcaattcctaagatttacaagcaatttgaggatgatcaattagatttccact 4024
Query: 489 cctattgtatgagaaaagggacaccaagagcctacgtgaatatgcttgaatggggaaacc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4025 cctattgtatgagaaaagggacaccaagagcctacgtgaatatgcttgaatggggaaacc 4084
Query: 549 acctctatactttgcctatgtttattagggctatggaaggtgcttcaaggataattttcc 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4085 acctctatactttgcctatgtttattagggctatggaaggtgcttcaaggataattttcg 4144
Query: 609 gaagattggattctttcgcacctaactgcatcagtcgaacaagagcctgaagacagctct 668
||||||| |||||||| ||| |||||||||||||| |||||||||| ||| ||||| |||
Sbjct: 4145 gaagatttgattcttt-gcaactaactgcatcagttgaacaagagcatgatgacagttct 4203
Query: 669 atcaagaag-agaccaaccaaagggccaaaaaagaagctggctgcttcgaataaaaagaa 727
||||||||| |||||||| ||| |||||||||||||||| ||||||| ||||||||||||
Sbjct: 4204 atcaagaagaagaccaacaaaaaggccaaaaaagaagct-gctgctttgaataaaaagaa 4262
Query: 728 ggaagaagaaaaggcccagtttcttgcctcccttgaagacagggatccattgggcgaaaa 787
|||||||||||||||| ||| |||||||| |||||| |||| ||||||||| || | |||
Sbjct: 4263 ggaagaagaaaaggccaagtatcttgcctaccttgatgacaaggatccatttggtg-aaa 4321
Query: 788 ctttactcaatgatccacatcc 809
||||||||||||||||| ||||
Sbjct: 4322 ctttactcaatgatccaaatcc 4343
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6676
Number of Sequences: 1807
Number of extensions: 6676
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 871
length of database: 10,358,551
effective HSP length: 16
effective length of query: 855
effective length of database: 10,329,639
effective search space: 8831841345
effective search space used: 8831841345
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)