BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE08RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1405 1227 0.0
>3x_Contig1405
Length = 9155
Score = 1227 bits (619), Expect = 0.0
Identities = 676/690 (97%), Gaps = 4/690 (0%)
Strand = Plus / Minus
Query: 48 caaacagaaaagaaagacgtactccgaaacctttgagaattgtgatacccttcaatggaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8875 caaacagaaaagaaagacgtactccgaaacctttgagaattgtgatacccttcaatggaa 8816
Query: 108 aaagcctaatgagccaaaatgttccaaaagaatacttttgcttccacttctttaacaaat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8815 aaagcctaatgagccaaaatgttccaaaagaatacttttgcttccacttctttaacaaat 8756
Query: 168 cactgttgaaaaaagaagttgcaggttattcactaagttgtggaaaagaaaactctcttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8755 cactgttgaaaaaagaagttgcaggttattcactaagttgtggaaaagaaaactctcttt 8696
Query: 228 atttcagtatttcagtgttctaacctataaacagattttcttccccatactaagcggtag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8695 atttcagtatttcagtgttctaacctataaacagattttcttccccatactaagcggtag 8636
Query: 288 tataacaaaaaaaaccaaaaactaggaaaaaaaaaagaccattcgctctacttgagttta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8635 tataacaaaaaaaaccaaaaactaggaaaaaaaaaagaccattcgctctacttgagttta 8576
Query: 348 acctacaaattttttttttttttagattcatatagattttcatgagctctgatttgatta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8575 acctacaaattttttttttttttagattcatatagattttcatgagctctgatttgatta 8516
Query: 408 gggacgaaggtttaaggaaaaaggactttctcggcttcaacggcctaaagaaaaacaata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8515 gggacgaaggtttaaggaaaaaggactttctcggcttcaacggcctaaagaaaaacaata 8456
Query: 468 caatagaaactgaataaaaaaaaaaaaaaaaaaaaataaaaaaaaataaaattcaaaaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8455 caatagaaactgaataaaaaaaaaaaaaaaaaaaaataaaaaaaaataaaattcaaaaat 8396
Query: 528 gggacattctgcatgtcccagctttgaaaaataatttaattttgaaaacaagttacaaac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8395 gggacattctgcatgtcccagctttgaaaaataatttaattttgaaaacaagttacaaac 8336
Query: 588 atagcagaaaatttgaaaggattcttgttagtatcctctagcttttcatttctttttgtt 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8335 atagcagaaaatttgaaaggattcttgttagtatcctctagcttttcatttcttttgttt 8276
Query: 648 cctctggaaaatttcccttagcttccaaaattcgaatttccagaaccttttccccgntga 707
|||||| ||||||| ||||||||| | |||||||||| | ||||| |||||| ||| |||
Sbjct: 8275 cctctgaaaaattt-ccttagctt-cgaaattcgaatatacagaa-cttttcaccgatga 8219
Query: 708 gattagatgagatggagatgattaaaggtt 737
||| ||||||||| |||||||| |||||||
Sbjct: 8218 gatgagatgagat-gagatgatgaaaggtt 8190
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,702
Number of Sequences: 1807
Number of extensions: 36702
Number of successful extensions: 5648
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)