BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE09FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1406 1427 0.0
>3x_Contig1406
Length = 8172
Score = 1427 bits (720), Expect = 0.0
Identities = 799/816 (97%), Gaps = 7/816 (0%)
Strand = Plus / Plus
Query: 86 taacaacctactacggccaatggcgctgtccaagactgacctttaggcagttttctcgtc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6250 taacaacctactacggccaatggcgctgtccaagactgacctttaggcagttttctcgtc 6309
Query: 146 tgaacttcaaagtcacatcaaatcggactcgaatcgaaattttcgaagttttcaaactag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6310 tgaacttcaaagtcacatcaaatcggactcgaatcgaaattttcgaagttttcaaactag 6369
Query: 206 aaaaaagaatctaattattgtaccaaatgtatgaacgaccaactccacaaaacgtaacgg 265
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370 aaaaaagaatcaaattactgtaccaaatgtatgaacgaccaactccacaaaacgtaacgg 6429
Query: 266 aattaaccagggtctcgctctctttccagacatccaagactaacgcgcgcacagataaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6430 aattaaccagggtctcgctctctttccagacatccaagactaacgcgcgcacagataaca 6489
Query: 326 cgaaccacgacttgaaccagaaatgccaccaccaccaaaagtttacggccaacaacaaca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6490 cgaaccacgacttgaaccagaaatgccaccaccaccaaaagtttacggccaacaacaaca 6549
Query: 386 accttcgaactgggaaaagttcaagatgggtttgatgatgggtactaccgttggtgtttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6550 accttcgaactgggaaaagttcaagatgggtttgatgatgggtactaccgttggtgtttg 6609
Query: 446 tactggcatcttattcggtggtgttgccattgttacacaaggcccaggtccaaacgggtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6610 tactggcatcttattcggtggtgttgccattgttacacaaggcccaggtccaaacgggtt 6669
Query: 506 tgtgagaaccttagggcagtacatcgctggttctgctgccacttttggcctatttatgag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6670 tgtgagaaccttagggcagtacatcgctggttctgctgccacttttggcctatttatgag 6729
Query: 566 tatcggttctgtcattagaagtgatggaacttccgacaactcccacaacaatggtttcta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6730 tatcggttctgtcattagaagtgatggaacttccgacaactcccacaacaatggtttcta 6789
Query: 626 ccatagtaagatggccgaattgcaacagagatcaagatttgaagtatggaaagctaaaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6790 ccatagtaagatggccgaattgcaacagagatcaagatttgaagtatggaaagctaaaca 6849
Query: 686 aacttatggtttgtacaaggattaagcgtttttacccagcaattgtacatgggtcagaag 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6850 aacttatggtttgtacaaggattaagcgtttttacccagcaattgtacatgggtcagagg 6909
Query: 746 cagcggtacctactaatcttttcgtatctactctatttctgtcctctcggtttattttta 805
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6910 cagcggtacctactaatcttttcgtatctactctatttctgtcctctcggtatattttta 6969
Query: 806 agttaaaaggattattggtaaatagggaatttaatatgatccattttttcgagaagaagc 865
|| ||||| || |||| ||||||| ||||||||| ||||| || ||||||||| || |||
Sbjct: 6970 ag-taaaatgaatatt-gtaaata-ggaatttaagatgat-caatttttcgag-aggagc 7024
Query: 866 ttgatgaagttaagaaccttggggagattacagtac 901
||||||||| ||||||| |||||||||||||||||
Sbjct: 7025 -tgatgaagtaaagaacc-tggggagattacagtac 7058
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6311
Number of Sequences: 1807
Number of extensions: 6311
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)