BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE09RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1302 0.0
>3x_Contig1806
Length = 53694
Score = 1302 bits (657), Expect = 0.0
Identities = 697/709 (98%), Gaps = 1/709 (0%)
Strand = Plus / Minus
Query: 37 tcaacctttgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggc 96
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31552 tcaagctttgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggc 31493
Query: 97 gaggatttccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaat 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31492 gaggatttccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaat 31433
Query: 157 gctgcagcaggtcgtgatgatgtaattccgatccagattaaggccattggcgatgacgat 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31432 gctgcagcaggtcgtgatgatgtaattccgatccagattaaggccattggcgatgacgat 31373
Query: 217 accgctgttagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31372 accgctgttagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattg 31313
Query: 277 ggaagtcaaacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaa 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31312 ggaagtcaaacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaa 31253
Query: 337 gtttcatcttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcac 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31252 gtttcatcttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcac 31193
Query: 397 ggttgtttcttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31192 ggttgtttcttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaat 31133
Query: 457 gtagcttcgtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaacct 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31132 gtagcttcgtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaacct 31073
Query: 517 ttctattacaagaaaatacgaaggagtcatcgctgaaataagtcgaatggaaaagtacat 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31072 ttctattacaagaaaatacgaaggagtcatcgctgaaataagtcgaatggaaaagtacat 31013
Query: 577 cttccctttagtttagtcacttttcgtattggctatttttgtcattctatgcttagtgca 636
|||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 31012 cttcccttaggtttagtcacttttcgtattggctattttgttcattctatgctaagtgca 30953
Query: 637 tgggctattgttacttcataactaataagttttcaacttgatgaactttgggaatactgc 696
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct: 30952 tgggctattgttacttcataactaat-agttttcaacttgatgaactctgtgaatactgc 30894
Query: 697 tccagaatatggttctggaatcaattttatacatacttctttcaggtac 745
|| |||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 30893 tcgagaatatggttctgaaatcaattttatacatacttctatcaggtac 30845
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7678
Number of Sequences: 1807
Number of extensions: 7678
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)