BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE10RM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1336 0.0
>3x_Contig1779
Length = 24855
Score = 1336 bits (674), Expect = 0.0
Identities = 718/730 (98%), Gaps = 2/730 (0%)
Strand = Plus / Minus
Query: 49 tgctaaatcggcttcaacgtcttttccgttaaagtcgctaggcttaacaaaggatgcgac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13063 tgctaaatcggcttcaacgtcttttccgttaaagtcgctaggcttaacaaaggatgcgac 13004
Query: 109 acaagaacagcgatcaatgacgctcaatatcttctttaaatcatttgccatactaggatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13003 acaagaacagcgatcaatgacgctcaatatcttctttaaatcatttgccatactaggatt 12944
Query: 169 atcacgcaaatctggaattagacattcctttataccaagttgaattaaacaactttctaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12943 atcacgcaaatctggaattagacattcctttataccaagttgaattaaacaactttctaa 12884
Query: 229 gttagagaaaacctcgttgtctagtagatcaaataacccaattctgtagttcgtgttgtc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12883 gttagagaaaacctcgttgtctagtagatcaaataacccaattctgtagttcgtgttgtc 12824
Query: 289 aacaaatgaaacaccaattgtgcaataatttgatgcagcagtaccattaaaatttaattt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12823 aacaaatgaaacaccaattgtgcaataatttgatgcagcagtaccattaaaatttaattt 12764
Query: 349 caaacttgctaaaacgatgttcgtttccactgaccctactattaaatcatctacttgttc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12763 caaacttgctaaaacgatgttcgtttccactgaccctactattaaatcatctacttgttc 12704
Query: 409 gaggttacctggtgaagctgttttcaaaagtttccagtttctatcgtagatttcgatctt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12703 gaggttacctggtgaagctgttttcaaaagtttccagtttctatcgtagatttcgatctt 12644
Query: 469 tttgcctagttccaatagtgatgtcttcaaaagattgcccactatttgaatagacatggt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12643 tttgcctagttccaatagtgatgtcttcaaaagattgcccactatttgaatagacatggt 12584
Query: 529 cacatatttcaatggttcctgtaaatcaaattggcgaagtgtgctaggatcgatcttgca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12583 cacatatttcaatggttcctgtaaatcaaattggcgaagtgtgctaggatcgatcttgca 12524
Query: 589 atctttcaatactgatgatgtatggtatacttgatctgccacaaataacgcatcatcacc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12523 atctttcaatactgatgatgtatggtatacttgatctgccacaaataacgcatcatcacc 12464
Query: 649 aaccacaatgtaataatcggatttgccaactaatctaataggattctgactcctttgaag 708
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct: 12463 aaccacaatgtaataatcggatttgtcaactaatctaatagtattctgactcctttgagg 12404
Query: 709 aagttggaaaaacctcttggagaaaccctcctccttctgcattatcagaaaacctttaga 768
|||||| |||||||||||| |||| || |||| |||||| |||||||||| |||||||
Sbjct: 12403 aagttgtaaaaacctcttgtagaatcctcgctcc-tctgcaatatcagaaaa-ctttaga 12346
Query: 769 tcaggtcttg 778
||||||||||
Sbjct: 12345 tcaggtcttg 12336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7940
Number of Sequences: 1807
Number of extensions: 7940
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)