BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE11FM1.SCF screened BAC_end
(1022 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 577 e-164
>3x_Contig1779
Length = 24855
Score = 577 bits (291), Expect = e-164
Identities = 353/371 (95%), Gaps = 2/371 (0%)
Strand = Plus / Minus
Query: 95 ttctttgcctgttcccaattcgttaaatcggataaatcaatcatgaacactaaaagatcg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8687 ttctttgcctgttcccaattcgttaaatcggataaatcaatcatgaacactaaaagatcg 8628
Query: 155 acttgttggaaacatcgatcccagagtttttgaaagcgggtttggccggctaaatcgtat 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8627 acttgttggaaacatcgatcccagagtttttgaaagcgggtttggccggctaaatcgtat 8568
Query: 215 acctttatattttgttggttcggcagctttacatctttgatgtttactcctaaagttggt 274
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8567 acctttagattggtatggttcggcagctttacatctttgatgtttactcctaaagttggt 8508
Query: 275 atcgtgtcgaccacaaactcctctccagctatcagattggtgaaagtcgttttacctgat 334
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8507 atcgtgtcgaccacaaactcctctccagctatcagattggtgaaagtcgttttacctgag 8448
Query: 335 ttttgcaaaccaacaactgcaatgctcaattgtttctgagtgctaggagtataaagccaa 394
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 8447 ttttgcaaaccaacaactgcaatgctcaattgtttctgagtgctcgcagtataaagccaa 8388
Query: 395 tcccaaaattgattgaactatttatagtaagtctatccatacctactcaacatctatagc 454
|||||||||||||||||| |||| || ||| | |||||||||||||||||| || |||
Sbjct: 8387 tcccaaaattgattgaaccatttccag-aag-caatccatacctactcaacagctcgagc 8330
Query: 455 tattaccgttt 465
||| |||||||
Sbjct: 8329 tatgaccgttt 8319
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6558
Number of Sequences: 1807
Number of extensions: 6558
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 1022
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1006
effective length of database: 10,329,639
effective search space: 10391616834
effective search space used: 10391616834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)