BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE11RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1390 0.0
>3x_Contig1529
Length = 11812
Score = 1390 bits (701), Expect = 0.0
Identities = 732/737 (99%), Gaps = 4/737 (0%)
Strand = Plus / Minus
Query: 43 gcttccgcttcaaagtccttaatatctgactgtacttgcaattgggttttgaaggttaat 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2492 gcttccgcttcaaagtccttaatatctgactgtacttgcaattgggttttgaaggttaat 2433
Query: 103 accaagccctcgagaatagataagataaatcgtggattaacatcgttgttcttaggtagg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2432 accaagccctcgagaatagataagataaatcgtggattaacatcgttgttcttaggtagg 2373
Query: 163 gatatcggatccaaaaaatgatgataatgtgaatcaaatcctaagtctgaaaataacttg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2372 gatatcggatccaaaaaatgatgataatgtgaatcaaatcctaagtctgaaaataacttg 2313
Query: 223 caaacctcataaaactggtcattcgatatggatcttgtctcaacctcaatttcaaaccct 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2312 caaacctcataaaactggtcattcgatatggatcttgtctcaacctcaatttcaaaccct 2253
Query: 283 cttctaattagatcgttcaactcagaatataatttatatccaacaatggtgaccagccat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 cttctaattagatcgttcaactcagaatataatttatatccaacaatggtgaccagccat 2193
Query: 343 tgtacgagaagtgagtaatgtcgtatatttaacccgagtttgtgtagtgctcgctctaaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 tgtacgagaagtgagtaatgtcgtatatttaacccgagtttgtgtagtgctcgctctaaa 2133
Query: 403 ggtaagaaaagaggctgtattttccttagttgaagttttattgttaggatgtgttttgcc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 ggtaagaaaagaggctgtattttccttagttgaagttttattgttaggatgtgttttgcc 2073
Query: 463 aagctcccaatagtcaatggactttcaatagtgttagtcatatgctgcatttcattgtca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 aagctcccaatagtcaatggactttcaatagtgttagtcatatgctgcatttcattgtca 2013
Query: 523 aagctttgtaagaaacctcttgtgacatcgagtaaacggttcttattgtcgtccaatcca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 aagctttgtaagaaacctcttgtgacatcgagtaaacggttcttattgtcgtccaatcca 1953
Query: 583 ttagcatccgagtaccttagttggtcaatccatcgtgtaagtcgtttattcacatctttt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 ttagcatccgagtaccttagttggtcaatccatcgtgtaagtcgtttattcacatctttt 1893
Query: 643 aactcatcctctgatttattcactaaattaccgtangtgaaccatgttagctctttttcg 702
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 1892 aactcatcctctgatttattcactaaattaccgta-gtgaaccatgttagctcttttccg 1834
Query: 703 tttcgaatattcatgggaagttaatagttcatatcttttcaggtgtcatacacaggggct 762
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 1833 tttcgaatattcatgggaagttaatagttcatatc-tttcaggtgtcatacaca-gggct 1776
Query: 763 caaacgtataacaagaa 779
| |||||||||||||||
Sbjct: 1775 c-aacgtataacaagaa 1760
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6556
Number of Sequences: 1807
Number of extensions: 6556
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)