BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE12FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1325 1217 0.0
>3x_Contig1325
Length = 7053
Score = 1217 bits (614), Expect = 0.0
Identities = 739/770 (95%), Gaps = 8/770 (1%)
Strand = Plus / Plus
Query: 86 aacatgaatactgaagatttacagacagacttctttcaaaggaacttcatctctccgcta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 aacatgaatactgaagatttacagacagacttctttcaaaggaacttcatctctccgcta 2837
Query: 146 actaaggccatggatatattgatgcctcagagggtctcacaaaacggaacaaagatacct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 actaaggccatggatatattgatgcctcagagggtctcacaaaacggaacaaagatacct 2897
Query: 206 gtggcatcgatgcttgattctgcatactcagtattgattcctccactacctgacaaatct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 gtggcatcgatgcttgattctgcatactcagtattgattcctccactacctgacaaatct 2957
Query: 266 tatataactgatccgaaaacaaggaaagacgttgtagtacatgataaagtatacagcgga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2958 tatataactgatccgaaaacaaggaaagacgttgtagtacatgataaagtatacagcgga 3017
Query: 326 caggatattccagatcatcaatctaatagccaattggaggtcatgaatagctcaaatgtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3018 caggatattccagatcatcaatctaatagccaattggaggtcatgaatagctcaaatgtt 3077
Query: 386 ctacttaaaacatttaacatagcttttggcgggcagtataaaaaattggaggaacaaata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3078 ctacttaaaacatttaacatagcttttggcgggcagtataaaaaattggaggaacaaata 3137
Query: 446 gcaagaaattggcataaagacgtcaaatggaggaaagtcattataaatttgaagcctgat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3138 gcaagaaattggcataaagacgtcaaatggaggaaagtcattataaatttgaagcctgat 3197
Query: 506 gctcacaacaatatcatcaccagaagaaggttctctaatgcgtacggttggccggtgggt 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3198 gctcacaacaatatcatcaccagaagaaggttctctaatgcgtacggttggccggtggtt 3257
Query: 566 gatcattttactgaaactcacttctttgatgacgataaatcttcacgatcatggaaactg 625
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3258 gatcatttaactgaaactcacttcttgaatgacgataaatcttcacgatcatggaaactg 3317
Query: 626 gatccttatctcgaa-gacgaagattttgactggattgtaaagcccacggtagatagcgt 684
||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3318 gatcc-tatctcgaaggacgaagattttgactggattgtaaagccaacggtagatagcgt 3376
Query: 685 attcgacgtaagttcaacgggcatgatttgtacttttggggaaatgttggaaaat-tgaa 743
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3377 attcgacgtaggtccaacgggcatgatttgtacttttggggaaatgttggaaaatctgaa 3436
Query: 744 aac-tccccact-gaaagtttgaacgaaagccctgt-ccaac-cttctacaaccacgaag 799
||| ||| |||| ||| || ||| ||||||| |||| ||||| || |||| ||| ||||
Sbjct: 3437 aacgtccacactggaaggtatgaccgaaagcactgtgccaacgctcgtacagccaggaag 3496
Query: 800 aattgtttaaaattaaaaactggttggattgggaatggcggaaaacttcc 849
||||||||||| | || |||| |||||| ||| ||||||||| ||||||
Sbjct: 3497 aattgtttaaatatgaagactgtttggataggg-atggcggaatacttcc 3545
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6835
Number of Sequences: 1807
Number of extensions: 6835
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)