BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZE12RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1714 1227 0.0
>3x_Contig1714
Length = 18873
Score = 1227 bits (619), Expect = 0.0
Identities = 697/715 (97%), Gaps = 6/715 (0%)
Strand = Plus / Minus
Query: 48 catatttagaatgggccgaaagtcagcaacttcaccagttgaggccatttcaactccgag 107
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8799 catatttagaatgg-ccgaaag-cagcaacttcaccagttgaggccatttcaactccgag 8742
Query: 108 aactggatctgcaccagccaaacgtgggaaagagaattgaggaactttgattgctacgta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8741 aactggatctgcaccagccaaacgtgggaaagagaattgaggaactttgattgctacgta 8682
Query: 168 gtcatcaggaagtttctccactgggtaaggggttacaggaatgcccataatggccttagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8681 gtcatcaggaagtttctccactgggtaaggggttacaggaatgcccataatggccttagt 8622
Query: 228 ggccatttcaatcaagttaacaccaacaactttcgagatgaatgggaacgaacgagatgc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8621 ggccatttcaatcaagttaacaccaacaactttcgagatgaatgggaacgaacgagatgc 8562
Query: 288 tctaacgttacattcaataaccttaatttcgttgttcttagcaataaattgaatgttata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8561 tctaacgttacattcaataaccttaatttcgttgttcttagcaataaattgaatgttata 8502
Query: 348 tggaccagtaatctgcaatgctctaccgattttgg-cagtggcttcaacgattctacgaa 406
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8501 tggaccagtaatctgcaatgctctaccgattttggccagtggcttcaacgattctacgaa 8442
Query: 407 ctgtttcagggtctaaatcttgaggaggaacaattagtgtagcgtcaccagagtgaacac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8441 ctgtttcagggtctaaatcttgaggaggaacaattagtgtagcgtcaccagagtgaacac 8382
Query: 467 ctgcgttttcaacatgctcagaaacgacatgcataatcaattcaccgtctaaggcaactg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8381 ctgcgttttcaacatgctcagaaacgacatgcataatcaattcaccgtctaaggcaactg 8322
Query: 527 cgtccatttcgatttccttagcattttcaatatatttggtgataacaactggatatttac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8321 cgtccatttcgatttccttagcattttcaatatatttggtgataacaactggatattcac 8262
Query: 587 gagaaactttcacggcctggttcaaataagattccaagtcatccttaaaat-gactgtat 645
||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 8261 gagaaacttccacggcctggttcaaataagattccaagtcatccttagaatagactgtat 8202
Query: 646 tcattgcggcacctgataagacctaggagggtctgactaaaacaagatagcttacttttt 705
|||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||
Sbjct: 8201 tcattgcggcacctgataagacgtaggaaggtctgactaaaacaggatagcttac-tttt 8143
Query: 706 tcaacaaaatcctcgggctcatccatgggaagtaaattcttttccaccaggttgg 760
||| |||||||||||| ||||||||| |||||| |||||||| | | ||||||||
Sbjct: 8142 tcagcaaaatcctcggcctcatccat-ggaagtcaattctttccaagcaggttgg 8089
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6784
Number of Sequences: 1807
Number of extensions: 6784
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)