BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF02FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1656 892 0.0
>3x_Contig1656
Length = 14482
Score = 892 bits (450), Expect = 0.0
Identities = 504/517 (97%), Gaps = 5/517 (0%)
Strand = Plus / Minus
Query: 90 caaccatacttattgccgattcatcttgagagctaaactcgggtactgtcacttgtttga 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9651 caaccatacttattgccgattcatcttgagagctaaactcgggtactgtcacttgtttga 9592
Query: 150 ctgcgagcatttctcctgttgtaacgttcaaagctagatacactgcaccgaaagaaccct 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9591 ctgcgagcatttctcctgttgtaacgttcaaagctagatacactgcaccgaaagaaccct 9532
Query: 210 taccaataatttcacctttaatccatgcaaactctttatactcacccctagagtttctgg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9531 taccaataatttcacctttaatccatgcaaactctttatactcacccctagagtttctgg 9472
Query: 270 atttgttaattgagattgtgcgtttatccgttatttctacgactttggtaccccacatct 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9471 atttgttaattgagattgtgcgtttatccgttatttctacgactttggtaccccacatct 9412
Query: 330 tagtattttttctttgcaatttctgagacacctcattttttctcgcctcgcttgcttctt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9411 tagtattttttctttgcaatttctgagacacctcattttttctcgcctcgcttgcttctt 9352
Query: 390 gggcaattattctgatggtctttgttctcttaggtggtttaa-ggcttttgacgggggtc 448
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9351 gggcaattattctgatggtctttgttctcttaggtggtttaagggcttttgacgggggtc 9292
Query: 449 aagaactgataactttcaccacgactagaaagaaatgctggctgttgctctgattttgtc 508
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9291 aagaactgagaactttcaccacgactagaaagaaatgctggctgttgctctgattttgtc 9232
Query: 509 tttaatgactttttaaaaccttttaggctttggaggtgaactgtctgcatttggggaagg 568
||||||||||||| |||||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 9231 tttaatgacttttcaaaacc-tctagggcttggaggtgaactgtctgcatttggggaagg 9173
Query: 569 tgggtggtttttaatccttcaaccgattggattatct 605
||| || | |||||||||||| |||||||||||||
Sbjct: 9172 tgg--gggtgttaatccttcaa-ggattggattatct 9139
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7128
Number of Sequences: 1807
Number of extensions: 7128
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)