BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF02RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1399 1394 0.0
>3x_Contig1399
Length = 7157
Score = 1394 bits (703), Expect = 0.0
Identities = 740/750 (98%), Gaps = 3/750 (0%)
Strand = Plus / Plus
Query: 51 gcttcataatgataatctcacgttcgatcccatatggcagctgtttgatctggttcgact 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4639 gcttcataatgataatctcacgttcgatcccatatggcagctgtttgatctggttcgact 4698
Query: 111 taacgaattttttgggaactatcttaatcgctgacagtttccccgtttccatattctttg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4699 taacgaattttttgggaactatcttaatcgctgacagtttccccgtttccatattctttg 4758
Query: 171 ctagacgaactcgacccgatgaccctttccccaaagtcttacccaatttccatttaccta 230
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4759 ctagacgaactcgacccgatgaccctttccccaaagtcttacccaatttccagggaccta 4818
Query: 231 ccgtatcgcggtttctcctcttcgaagtcttggtattattaacattagcattcgacgatg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4819 ccgtatcgcggtttctcctcttcgaagtcttggtattattaacattagcattcgacgatg 4878
Query: 291 cagtcgaaatctgtgaaagacgcttagtagcgtctgttactgactgaacaaccctattca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4879 cagtcgaaatctgtgaaagacgcttagtagcgtctgttactgactgaacaaccctattca 4938
Query: 351 aatgttcattatttgcacgatatgggacctggccgtgactagaattatccttcattgcca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4939 aatgttcattatttgcacgatatgggacctggccgtgactagaattatccttcattgcca 4998
Query: 411 caacggcagcttgaacagcacacgacatctagcacaaacaaagcaagcgagtgaaattga 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4999 caacggcagcttgaacagcacacgacatctagcacaaacaaagcaagcgagtgaaattga 5058
Query: 471 gaaagcaaaagagcagaagagagcgtgtgtgagtgtttaagtatgataagcgaatgtaat 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5059 gaaagcaaaagagcagaagagagcgtgtgtgagtgtttaagtatgataagcgaatgtaat 5118
Query: 531 gattggaaaataaacacactctgtgatcaaatcaatgattcttcttcttcttattattat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5119 gattggaaaataaacacactctgtgatcaaatcaatgattcttcttcttcttattattat 5178
Query: 591 tagtattcttcttcttccttataattcaaatggtagacctagccttgtaatttgcagttc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5179 tagtattcttcttcttccttataattcaaatggtagacctagccttgtaatttgcagttc 5238
Query: 651 cagcagagcgacaaatcagcgttactgatgatgttaacgttgcttggggtcttttctctt 710
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 5239 cagcagagcgacaaatcagcgttactgatgatgttaacgttgcttggtgtcttctctctt 5298
Query: 711 ggatgttgtttggtttcaaattctgattc-aacattggtatgtgtgcatatatttcatga 769
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 5299 ggatgttgtttggtttcaaattctgattcaaacattgttatgtgtgcatatatttcatga 5358
Query: 770 aaggggcttttatttggtaaatagttgaag 799
||||| ||||||||||||||||||||||
Sbjct: 5359 aaggg--ctttatttggtaaatagttgaag 5386
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9015
Number of Sequences: 1807
Number of extensions: 9015
Number of successful extensions: 110
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)