BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF04RM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1433 1536 0.0
>3x_Contig1433
Length = 8270
Score = 1536 bits (775), Expect = 0.0
Identities = 813/822 (98%), Gaps = 3/822 (0%)
Strand = Plus / Plus
Query: 48 tgaagaacatatcagatccttcctctccatggcaacagcaagtgagagaaaatttgttca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5324 tgaagaacatatcagatccttcctctccatggcaacagcaagtgagagaaaatttgttca 5383
Query: 108 ctcagccgtaccatttgtcaagtgatattttattcgatttatctagatcagatacaacac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5384 ctcagccgtaccatttgtcaagtgatattttattcgatttatctagatcagatacaacac 5443
Query: 168 catttttgcagttgttgcgtgcacagatggtcgatgaagtaattaaaattttcagaaggc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5444 catttttgcagttgttgcgtgcacagatggtcgatgaagtaattaaaattttcagaaggc 5503
Query: 228 atggtgctattgaaaacaatgagcctcctataatttttccaaaggcaccaatatattcta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5504 atggtgctattgaaaacaatgagcctcctataatttttccaaaggcaccaatatattcta 5563
Query: 288 ctcaaaatgtatacgaagttttggaccggggtggctctgtgttgcaattgcaatacgatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5564 ctcaaaatgtatacgaagttttggaccggggtggctctgtgttgcaattgcaatacgatt 5623
Query: 348 taacatatccaatggcaagatacttgtcaaaaaatcccaatacaacatccaagcaatacc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5624 taacatatccaatggcaagatacttgtcaaaaaatcccaatacaacatccaagcaatacc 5683
Query: 408 gtatgcagtatgttttccgaccctcagagagtactcattcgagcactgagcctagaaaat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5684 gtatgcagtatgttttccgaccctcagagagtactcattcgagcactgagcctagaaaat 5743
Query: 468 ttggtgaggtggattttgatatcatatctaactctagtactgactctgcagtccacgatg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5744 ttggtgaggtggattttgatatcatatctaactctagtactgactctgcagtccacgatg 5803
Query: 528 ccgagtgtttgaaagtcgttgacgaaattgtctctaccttccccgtctttaccaacacca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5804 ccgagtgtttgaaagtcgttgacgaaattgtctctaccttccccgtctttaccaacacca 5863
Query: 588 acaccatccttgtcatcaaccatgcagatatcttggatggtgtgttcaacttctgcaata 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5864 acaccatccttgtcatcaaccatgcagatatcttggatggtgtgttcaacttctgcaata 5923
Query: 648 tcgataaggctcaacggtcccttgtatcccatatgctatctcaacttggttttgggagag 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5924 tcgataaggctcaacggtcccttgtatcccatatgctatctcaacttggttttgggagag 5983
Query: 708 cattcaaagatttgaaaatcgatctaaggtcgcaattaaatatatcctctacctcgttga 767
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5984 cattcaaggatttgaaaatcgatctaaggtcgcaattaaatatatcctctacctcgttga 6043
Query: 768 atgatcttgaactttttgatttcagatcagatttagaaacgttcaaaaagagactaagnc 827
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6044 atgatcttgaactttttgatttcagatcagatttagaaacgtccaaaaagagactaagca 6103
Query: 828 agctttttatttgatagttccctaccttgaaccgaattgagg 869
||| ||||| ||||||| |||||| |||||| ||||||||||
Sbjct: 6104 agc-ttttagttgatag-tcccta-cttgaagcgaattgagg 6142
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6624
Number of Sequences: 1807
Number of extensions: 6624
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)