BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF05FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1263 0.0
>3x_Contig1749
Length = 22923
Score = 1263 bits (637), Expect = 0.0
Identities = 732/761 (96%), Gaps = 2/761 (0%)
Strand = Plus / Plus
Query: 86 cgtaccaaatcccattgctctgcagtggtaagcatatgtttcgaaagtaagtaatcaaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21231 cgtaccaaatcccattgctctgcagtggtaagcatatgtttcgaaagtaagtaatcaaat 21290
Query: 146 gcctcgtaatttttaacgtcaacttgcactgcttctttaaagcattctttggcctgttcc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21291 gcctcgtaatttttaacgtcaacttgcactgcttctttaaagcattctttggcctgttcc 21350
Query: 206 atgttactaaggtatacgtatattctgcctcttaacaaacacattgacgattcgagcttt 265
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21351 atgttactaagggagacgtatattctgcctcttaacaaacacattgacgattcgagcttt 21410
Query: 266 acaccaccatctgcattccctggagaggacggttcactttgaaacgggttcgtgtctccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21411 acaccaccatctgcattccctggagaggacggttcactttgaaacgggttcgtgtctccg 21470
Query: 326 atgatatcaagtgcctcttcaagtttgtttaatttgaaaagacataatgctgccaagtag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21471 atgatatcaagtgcctcttcaagtttgtttaatttgaaaagacataatgctgccaagtag 21530
Query: 386 cggcacattatgctttccgaatccaattgatccgtaaatattagttccacggctcgcacg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21531 cggcacattatgctttccgaatccaattgatccgtaaatattagttccacggctcgcacg 21590
Query: 446 taagatccttgattgtaatacacttgtgccaaccaaaaggcatcgttgggatcctttgtc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21591 taagatccttgattgtaatacacttgtgccaaccaaaaggcatcgttgggatcctttgtc 21650
Query: 506 attgaatagatgagatcaccgatgtgttcggcagttttataatggtgttgcatcaaggca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21651 attgaatagatgagatcaccgatgtgttcggcagttttataatggtgttgcatcaaggca 21710
Query: 566 tcgtgcctccaaagccgtattttctctacagatgaaagatcgctaacatcgaatacatta 625
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 21711 tcgtgcctccaaagccgtagtttctctacagatgaaagatcgctaacatcgaatacatta 21770
Query: 626 tcgctggcatggtctatatcttcgtcattcgtagaattgtttaactcaacagggtccgtc 685
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 21771 tcgctggcatggtctatatcttcgtcattcgtagaattgtttagctcaacagtgtccgtc 21830
Query: 686 gatgtactaattttttttaaagtataccgaattgccggtccaaattaatcattctttttt 745
||||||||| ||||| |||||||| || | | ||||||||||||| | |||||||| |
Sbjct: 21831 gatgtactagtttttcttaaagtagacggcagtgccggtccaaataatccattctttgtc 21890
Query: 746 ttcgaccctaataaactaaatcctgcattaccattgtgccttattacggcaggagttgct 805
||||| |||||| |||| |||||||| ||||||||||||| || |||||||||||||||
Sbjct: 21891 atcgacgctaatagactagatcctgcagtaccattgtgcctcataacggcaggagttgct 21950
Query: 806 aaatggggatacatttttttattttttgcactaaaggactt 846
|||| |||||||| | | |||| || |||||||||||||||
Sbjct: 21951 aaat-gggataca-tctcttatcttctgcactaaaggactt 21989
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7102
Number of Sequences: 1807
Number of extensions: 7102
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)