BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF05RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1735 1287 0.0
>3x_Contig1735
Length = 19486
Score = 1287 bits (649), Expect = 0.0
Identities = 677/681 (99%), Gaps = 4/681 (0%)
Strand = Plus / Minus
Query: 50 ttgagtttgaaggaccgataggaacatacgtattggagccagggtttggaaggctaagat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9818 ttgagtttgaaggaccgataggaacatacgtattggagccagggtttggaaggctaagat 9759
Query: 110 catcatcggaatcaccatcaaagtttataccagatactccagttaatcctgctgctcctt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9758 catcatcggaatcaccatcaaagtttataccagatactccagttaatcctgctgctcctt 9699
Query: 170 cgcgggaacctgagcccgtaactcctagtgaattcgagtacgatcccaagtttggaccct 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9698 cgcgggaacctgagcccgtaactcctagtgaattcgagtacgatcccaagtttggaccct 9639
Query: 230 gcatgggattacgcgcagctgcagccggtgcagccggcccaggattatgagaaacgtagt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9638 gcatgggattacgcgcagctgcagccggtgcagccggcccaggattatgagaaacgtagt 9579
Query: 290 catgttgctgtctatgatcatacaacttagtatgctcttcagttttcaatgacgccaaag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9578 catgttgctgtctatgatcatacaacttagtatgctcttcagttttcaatgacgccaaag 9519
Query: 350 aatgtgctgctgaagtagtacgagaaatctcgtgttctccggaatcaactgatttatcat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9518 aatgtgctgctgaagtagtacgagaaatctcgtgttctccggaatcaactgatttatcat 9459
Query: 410 cagacatctctgattatttcgacgcttgccctgttaggcttaacagtataataaataaaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9458 cagacatctctgattatttcgacgcttgccctgttaggcttaacagtataataaataaaa 9399
Query: 470 aacgtattcgtagtgggaacgttgaacttttcaatcgtgtaaccttgagtcttatcgttt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398 aacgtattcgtagtgggaacgttgaacttttcaatcgtgtaaccttgagtcttatcgttt 9339
Query: 530 tagcttacaaatagacaggctaggttatactatcactatagtgagaaacgatttaggttg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9338 tagcttacaaatagacaggctaggttatactatcactatagtgagaaacgatttaggttg 9279
Query: 590 aaactgccaaatgcttaacaaaacgggccttttgaggcagctaagttcgtcacaactaaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9278 aaactgccaaatgcttaacaaaacgggccttttgaggcagctaagttcgtcacaactaaa 9219
Query: 650 acagcaaaggaagggtgacagctaaaatcttgactatcacacacttcatattggttaaat 709
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 9218 acagcaaa-gaagggtgacagct-aaatcttgactatcacacacttcata-tggttaaat 9162
Query: 710 gttttgaagaattatgtattt 730
| |||||||||||||||||||
Sbjct: 9161 g-tttgaagaattatgtattt 9142
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6302
Number of Sequences: 1807
Number of extensions: 6302
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)