BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF06FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 862 0.0
>3x_Contig1761
Length = 23186
Score = 862 bits (435), Expect = 0.0
Identities = 483/495 (97%), Gaps = 3/495 (0%)
Strand = Plus / Plus
Query: 71 tgccaatgtggacctggcccatctgcctctaccgatgatactaggtcctttgcatctagc 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10076 tgccaatgtggacctggcccatctgcctctaccgatgatactaggtcctttgcatctagc 10135
Query: 131 aaagccactgctgacgccggctctactacacctctaaacacgtttaaatcgtccgaaaaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10136 aaagccactgctgacgccggctctactacacctctaaacacgtttaaatcgtccgaaaaa 10195
Query: 191 gtgccaaagaaatttttatgctgctgcaatggtgatgaagatccagaggaagaagcagaa 250
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10196 gtgccaaagaaagtcggatgctgctgcaatggtgatgaagatccagaggaagaagcagaa 10255
Query: 251 agaaaaattagaggcattgctactcaaagagaacaggcgggaaacatgaacgtagattta 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10256 agaaaaattagaggcattgctactcaaagagaacaggcgggaaacatgaacgtagattta 10315
Query: 311 ttacctgctgaaaatttcaaataatctaaggcttttccaacgtgctagaagaaatggaat 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10316 ttacctgctgaaaatttcaaataatctaaggcttttccaacgtgctagaagaaatggaat 10375
Query: 371 gagggtcttgtgccatttaggttacttcagctcctgcttagtattaatctttaaatccta 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10376 gagggtcttgtgccatttaggttacttcagctcctgcttagtattaatctttaaatccta 10435
Query: 431 tatatcatgcgtataaataatttaatgactcggataaacaggtaatatcatgaattggca 490
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 10436 tatatcatgcgtataaataatttaatgactcggataaacagttaatatcatgaattggca 10495
Query: 491 tattaattttgaagttcgcactgggtaaagaatggtccacgcatatcaactattggaata 550
|| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||| | |||
Sbjct: 10496 ta-taattttgaagttcg-actggttaaggaatggtccacgcatatcaactatt-gtata 10552
Query: 551 agtttggaaagactg 565
||||||| |||||||
Sbjct: 10553 agtttggtaagactg 10567
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7597
Number of Sequences: 1807
Number of extensions: 7597
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)