BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF06RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1310 0.0
>3x_Contig1771
Length = 25932
Score = 1310 bits (661), Expect = 0.0
Identities = 712/725 (98%), Gaps = 3/725 (0%)
Strand = Plus / Minus
Query: 38 gcttgactactcacgtagggtagagattgctcaaatattccgtaacaaattacagaagtg 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8702 gcttgactactcacgtagggtagagattgctcaaatattccgtaacaaattacagaagtg 8643
Query: 98 tttggttcaacgagataccccaccaacagatgcagatcttgccgagtctgataaactcat 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8642 tttggttcaacgagataccccaccaacagatgcagatcttgccgagtctgataaactcat 8583
Query: 158 gaggaaaatcctatcacatactaaatcaacaccggaattctttgatttagaagcccttag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8582 gaggaaaatcctatcacatactaaatcaacaccggaattctttgatttagaagcccttag 8523
Query: 218 ggtatccaaattgcataaactattaaaagtcatttctagtatgcctgaattatcacagtt 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8522 ggtatccaaattgcataaactattaaaagtcatttctagtatgcctgaattatcacagtt 8463
Query: 278 tcacgaatcttgtaacactatattggaagtgtgggcacctcatgttcaaaagatcaaaaa 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8462 tcacgaatcttgtaacactatattggaagtgtgggcacctcatgttcaaaagatcaaaaa 8403
Query: 338 ggaaaaactgaaactgaagggttcgctatccccatagagtggatcacaactgtcactttt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402 ggaaaaactgaaactgaagggttcgctatccccatagagtggatcacaactgtcactttt 8343
Query: 398 aatatcttcgattcataataagagcacaaaagaaccgttcaaaaggaaagcacaaacaat 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8342 aatatcttcgattcataataagagcacaaaagaaccgttcaaaaggaaagcacaaacaat 8283
Query: 458 gcattactgctttataacaaattcaattcaattctgacattattctcatgtaaaatctat 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8282 gcattactgctttataacaaattcaattcaattctgacattattctcatgtaaaatctat 8223
Query: 518 cacattaacctacataatctcatccctaccacctctccagttacctcaccgtacctattc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8222 cacattaacctacataatctcatccctaccacctctccagttacctcaccgtacctattc 8163
Query: 578 cttcttttcttggacccttcaatcataatgtatcatttatttacgtttatcgctctgttt 637
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 8162 cttcttttcttggacccttcaatcataatgtatca-ttatttacgtttatcgctctgttc 8104
Query: 638 cccatcaattgttattatttacaaaattgccaaaaccttttaaatgacttttaggtaaca 697
||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||
Sbjct: 8103 cccatcaattgttattattaacaaaattgccaaaacctttaaaatgactttaaggtagca 8044
Query: 698 aaattgtgcacttcattacaaacattatacattttttcccttaagcttgcacaattaggg 757
||||||||||||||||||||||||| | ||| | |||||| |||||| |||| |||||||
Sbjct: 8043 aaattgtgcacttcattacaaacatcagaca-tctttcccataagctagcac-attaggg 7986
Query: 758 aaccg 762
|||||
Sbjct: 7985 aaccg 7981
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8746
Number of Sequences: 1807
Number of extensions: 8746
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)