BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF07FM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1005 793 0.0
3x_Contig1403 385 e-106
>3x_Contig1005
Length = 3979
Score = 793 bits (400), Expect = 0.0
Identities = 478/499 (95%), Gaps = 4/499 (0%)
Strand = Plus / Minus
Query: 390 ggacttcaaagtgtttcattatgagggcttcgaaaagacaagaaataaattcaacactga 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3968 ggacttcaaagtgtttcattatgagggcttcgaaaagacaagaaataaattcaacactga 3909
Query: 450 ttcaccggcagaaatagtagaattgatgtctcaatacgatgttgtgatatgttcatacta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 ttcaccggcagaaatagtagaattgatgtctcaatacgatgttgtgatatgttcatacta 3849
Query: 510 tacgatgtctgcagaagttcactatgctgagtttagcaaaatacaaagacctagtagaga 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3848 tacgatgtctgcagaagttcactatgctgagtttagcaaaatacaaagacctagtagaga 3789
Query: 570 ctctactagacgatacgattacacttctccattatctattatggaattccatagggtcat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3788 ctctactagacgatacgattacacttctccattatctattatggaattccatagggtcat 3729
Query: 630 tttggatgaagcacagctacttggaggcggtatgaccaatgcctcacgctgtacaagtct 689
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3728 tttggatgaggcacagctacttggaggcggtatgaccaatgcctcacgctgtacaagtct 3669
Query: 690 aatccacanggttcatacttggggggtgtcaggtacccctgtggagtggtattttcatat 749
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3668 aatccacagggttcatacttggggggtgtcaggtacccctgtggagtggtatttccatat 3609
Query: 750 tcgtgatatttttggttacctacagatccattcattcccagttttagaccagaatgttgg 809
|||||||||||||| |||||||||||||||| |||||| |||||||||||||||| |||
Sbjct: 3608 tcgtgatatttttgtttacctacagatccatccattccaggttttagaccagaatg-tgg 3550
Query: 810 taaaccctggctgcccttccaatgccctttaatcgtgccaacctatgcaaaaaaacccgg 869
| ||| ||| |||| ||||||||| ||||| |||||||||| |||||| | |||| || |
Sbjct: 3549 ttaacgctgtctgcacttccaatg-cctttcatcgtgccaa-ctatgc-agaaaatcctg 3493
Query: 870 aaaactacccttacctcgg 888
|||||||| || |||||||
Sbjct: 3492 aaaactacactcacctcgg 3474
>3x_Contig1403
Length = 7711
Score = 385 bits (194), Expect = e-106
Identities = 197/198 (99%)
Strand = Plus / Plus
Query: 88 actggttacattctgccaatggaggaggcatggaaaatatatgaggaatggttctctgac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7514 actggttacattctgccaatggaggaggcatggaaaatatatgaggaatggttctctgac 7573
Query: 148 ccttccagtgggaaaaaggctagaggtgtacttgctgatgagatgggtctagggaaaact 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7574 ccttccagtgggaaaaaggctagaggtgtacttgctgatgagatgggtctagggaaaact 7633
Query: 208 atcgaaattctgactttgatctctactaatgtacggaatctatcaaatgagtcaagcagt 267
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7634 atcgaaattctgactttgatctctacttatgtacggaatctatcaaatgagtcaagcagt 7693
Query: 268 ttcgtttctccaataaat 285
||||||||||||||||||
Sbjct: 7694 ttcgtttctccaataaat 7711
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5558
Number of Sequences: 1807
Number of extensions: 5558
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)