BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF07RM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig641 1421 0.0
>3x_Contig641
Length = 2317
Score = 1421 bits (717), Expect = 0.0
Identities = 802/820 (97%), Gaps = 9/820 (1%)
Strand = Plus / Minus
Query: 48 ctggttcaattcatttcttttggtcttgttactggggcttttaccagcctgctagctgtt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 ctggttcaattcatttcttttggtcttgttactggggcttttaccagcctgctagctgtt 1612
Query: 108 tttctgtaggcaaaactgtaaggggcacgtgaaatacgaaatcgtatccctccatgtctc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 tttctgtaggcaaaactgtaaggggcacgtgaaatacgaaatcgtatccctccatgtctc 1552
Query: 168 ttttggcatggtatagggtaccttttcggtcctcataggttttactcaatgatatttcag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 ttttggcatggtatagggtaccttttcggtcctcataggttttactcaatgatatttcag 1492
Query: 228 tgttttgctcagctaatggaatcatgacaaatttaaatgttagcatccatttaagttgaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 tgttttgctcagctaatggaatcatgacaaatttaaatgttagcatccatttaagttgaa 1432
Query: 288 atatgtttgttttaaattgactagtaatgtaagtcgtgggagagcattgaggaataagtt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 atatgtttgttttaaattgactagtaatgtaagtcgtgggagagcattgaggaataagtt 1372
Query: 348 tcatgcaaatcttatcgcaattatcgaaatttgtagcgtgagtttcgtagactaaagttc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 tcatgcaaatcttatcgcaattatcgaaatttgtagcgtgagtttcgtagactaaagttc 1312
Query: 408 ccgaaggcttcttctttgagatattttcatctgacgagaattttggattaatcaactcaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 ccgaaggcttcttctttgagatattttcatctgacgagaattttggattaatcaactcaa 1252
Query: 468 atgtttcgatggatgctgtcacagcagtcactttaaaattggaattatcttctacatttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 atgtttcgatggatgctgtcacagcagtcactttaaaattggaattatcttctacatttt 1192
Query: 528 tcaagtcaagtattatatcgatttgatcggaaacagagtacgctggtttggagagttcta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 tcaagtcaagtattatatcgatttgatcggaaacagagtacgctggtttggagagttcta 1132
Query: 588 aattacaaatgaacttatcattcatttttacaacatactcagtttgtaatgactgcaact 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 aattacaaatgaacttatcattcatttttacaacatactcagtttgtaatgactgcaact 1072
Query: 648 gcgatagtagcgaaaaatttgctttgcgtctcatcaatagagttctctgggatacctgta 707
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 gcgatagtagcgaagaa-ttgctttgcgtctcatcaatagagttctctgggatacctgta 1013
Query: 708 aaataaaatgccgac-agttcattcggactgaggttgagggttctgtttcaaattgttgg 766
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1012 aaataaaattgcgacaagttcattcggactgaggttgagggttctgtttcaaattgtt-g 954
Query: 767 gccttataatgaatcaatgggtacgttcggaataatcattttcatttccattctgaagac 826
|||| |||||||||||||||||||| ||||||| |||||||||| |||||||||| ||||
Sbjct: 953 gcctaataatgaatcaatgggtacg-tcggaatcatcattttca-ttccattctg-agac 897
Query: 827 aacctcttttaaccttttggtttcatggccttcaatcgaa 866
|| ||||| ||| ||| ||||||||| |||||||||||
Sbjct: 896 tacgtctttaaac--ttttgtttcatgg-cttcaatcgaa 860
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7054
Number of Sequences: 1807
Number of extensions: 7054
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)