BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF08FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1428 1197 0.0
>3x_Contig1428
Length = 9146
Score = 1197 bits (604), Expect = 0.0
Identities = 688/708 (97%), Gaps = 6/708 (0%)
Strand = Plus / Minus
Query: 87 accagtacttaattcgtcatacgtatgtaaatataccaaatt-caggcagaaccagttgc 145
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 8994 accagtacttaattcgtcatacgtatgtaaatataccaaaatacaggcagaaccagttgc 8935
Query: 146 catttaaattagcagttgtaaacctcaataactttctttacctaaattccgttgttgcat 205
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8934 catttaaattagcagttgtaaacctcaatcactttctttacctaaattccgttgttgcat 8875
Query: 206 cgcagcgttctttttttaaacaattaacttttcacgtccagctccatgactttaatgaaa 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8874 cgcagcgttctttacctaaacaattaacttttcacgtccagctccatgactttaatgaaa 8815
Query: 266 aattgtgtgaaatatagggaaaagatatatcaactgatctcattgcaactttttttttaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8814 aattgtgtgaaatatagggaaaagatatatcaactgatctcattgcaactttttttttaa 8755
Query: 326 acgtagaccagaataacaggaataacgctcaatcagcacatctaagaatccttagcggag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8754 acgtagaccagaataacaggaataacgctcaatcagcacatctaagaatccttagcggag 8695
Query: 386 tcgctacagctgaaatataattcgtatagacgttagcgtcaagaaatagtagatacacaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8694 tcgctacagctgaaatataattcgtatagacgttagcgtcaagaaatagtagatacacaa 8635
Query: 446 tat-aaattgacaagcaatggtttcattgacaaagagagtattatttgaagttattccga 504
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8634 tatcaaattgacaagcaatggtttcattgacaaagagagtattatttgaagttattccga 8575
Query: 505 atccacctgatgagacgactttgactttatcctctaccaccaacaaaggtcactacatat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8574 atccacctgatgagacgactttgactttatcctctaccaccaacaaaggtcactacatat 8515
Query: 565 ccgttagacctttcgtcaatgctgaaggtaaggaattcccatttgaatgggcttttggtg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8514 ccgttagacctttcgtcaatgctgaaggtaaggaattcccatttgaatgggcttttggtg 8455
Query: 625 gtacatctgatcacattgaattgaaaaaaatcaatgagagagcccactccttaaacttca 684
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 8454 gtacatctgatcacattgaattgaaaaaaatcaatgagagagccaactccttaaacttca 8395
Query: 685 attttaagttcgatacaaaagtgaagttgaatgttccaagaacttattcgtggtgttatc 744
||||||||||||||||||| |||||||||||||||||| |||| | |||||||||||||
Sbjct: 8394 attttaagttcgatacaaatgtgaagttgaatgttccagaaactca-tcgtggtgttatc 8336
Query: 745 aaaacccgctttcaaaacttgggatttccggttttggttgaaaaaact 792
|||| ||| ||||| |||||||| |||||| |||||||||| |||||
Sbjct: 8335 aaaa-ccgtcttcaagacttggga-ttccgg-tttggttgaagaaact 8291
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8276
Number of Sequences: 1807
Number of extensions: 8276
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)