BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF08RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1217 0.0
>3x_Contig1759
Length = 25622
Score = 1217 bits (614), Expect = 0.0
Identities = 655/666 (98%), Gaps = 2/666 (0%)
Strand = Plus / Plus
Query: 49 tatttcgagccgggtatctcatgagagacaatagtatatccattcactgaaactaccaaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10032 tatttcgagccgggtatctcatgagagacaatagtatatccattcactgaaactaccaaa 10091
Query: 109 tcagctctttcatctaacatcaaggggcatcggaatttgattctcttgatttcctttgtt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10092 tcagctctttcatctaacatcaaggggcatcggaatttgattctcttgatttcctttgtt 10151
Query: 169 cttttcactttcgattttatgtacgatgcattaatgggattagtactagggccgtgtgag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10152 cttttcactttcgattttatgtacgatgcattaatgggattagtactagggccgtgtgag 10211
Query: 229 gatagccatgattgtgcttcgttgatctttgaaccccatttcaagatatctgcatacata 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10212 gatagccatgattgtgcttcgttgatctttgaaccccatttcaagatatctgcatacata 10271
Query: 289 gaatcgtcaaatggtttatcttcagaaccaatgaaaaatgtgacaaaattgatataatag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10272 gaatcgtcaaatggtttatcttcagaaccaatgaaaaatgtgacaaaattgatataatag 10331
Query: 349 tcatataaatcgtcgacaacttttctaagacgagatctgctgtcaacgttcaagaactca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10332 tcatataaatcgtcgacaacttttctaagacgagatctgctgtcaacgttcaagaactca 10391
Query: 409 gccggtttgtcgtcatcagtaaaaaaaaatattttcttgttagtcagttgcttctgtcct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10392 gccggtttgtcgtcatcagtaaaaaaaaatattttcttgttagtcagttgcttctgtcct 10451
Query: 469 tctatcggttgtaaaaatgtttctctaactttgatcaatactggagaaagttcaattggg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10452 tctatcggttgtaaaaatgtttctctaactttgatcaatactggagaaagttcaattggg 10511
Query: 529 ttgtttgggtctgcgataggaatctcatctttgagaagtattctatccttgtctatatct 588
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10512 ttgtttgggtctgcgataggaatctcatctttgagaagtattctatcctgttctatatct 10571
Query: 589 tccaacagatcagatacacgtttcatattcttatagttcacattacgtaacggtattagt 648
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 10572 tccaacagatcagatacacgtttcatattcttatagttcacatcacgtaacggtattagt 10631
Query: 649 tcatacacatttatcttcagcgttaagatgaaaaccgctgtatatttaacagtccaactg 708
||||||||| ||||||||||||||| ||||| ||| | |||| || |||||| |||||||
Sbjct: 10632 tcatacaca-ttatcttcagcgttaggatgagaacagttgtaaatataacag-ccaactg 10689
Query: 709 cagtac 714
||||||
Sbjct: 10690 cagtac 10695
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8776
Number of Sequences: 1807
Number of extensions: 8776
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)