BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF09RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1065 0.0
>3x_Contig1507
Length = 11359
Score = 1065 bits (537), Expect = 0.0
Identities = 639/669 (95%), Gaps = 3/669 (0%)
Strand = Plus / Minus
Query: 44 ctttcagatcaaacaaaccgcgaacctcatatcatgttgtagttgttttttgataatata 103
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 5486 ctttcagatcaaacaaaccgcgaacctcatatcatgttgtagtttttttttgagaatata 5427
Query: 104 ttaaagagaatagaaggtggaacaagtgagggctgtaccattcttgtggaaccttttaac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5426 ttaaagagaatagaaggtggaacaagtgagggctgtaccattcttgtggaaccttttaac 5367
Query: 164 cttaatttggtgcacagcttgattttcatcttgaataatagtgatattctcaattttaac 223
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 5366 cttaattcggtgcacagcttgattttcatcttgaataatagtgttattctcaatcgaaac 5307
Query: 224 aaactctcatgcacgagagataaaatcattctcaccaaaataagaaagtggctttcctat 283
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5306 aaactctcatgcaggagagataaaatcattctcaccaaaataagaaagtggttttcctat 5247
Query: 284 tcaattgatttaatgttcaccgcccttgtggtgtctcaaatggaagtagtattaccatag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5246 tcaattgatttaatgttcaccgcccttgtggtgtctcaaatggaagtagtatt-ccatag 5188
Query: 344 agtaacccaatgtcatgatacctatggccaaatgcaatagatgcttaccagaggcatttt 403
||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 5187 agtaacccaatgtcaagataccaatggccaaatgcaatagaggcttaccagaggcatttt 5128
Query: 404 caccatcaaaaaacttgaccttgtatctaccgatcaaaccatatggcttgacagcagcag 463
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5127 caccatcaaaaaacttggccttgtatctaccgatcaaaccagatggcttgacagcagcag 5068
Query: 464 cttcaccttgtggcaaggacttatagaaggaaacgacattatcaatacgcttagcatttg 523
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5067 cttcaccttgtggcaaggacttatagaaggaaacgacattagcaatacgcttagcatttg 5008
Query: 524 gagcagagcccaagttctgtgatcaaatagaagttcaaatgaaacccaaggttttggaaa 583
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 5007 gagcagagcccaagttctgtgatcaaatagaagttcaaatgaaaccaaagg-tttggaaa 4949
Query: 584 tcatttatatatcatgttagtaaaacggcattcagaaagtaaccaaaatcttggattgat 643
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 4948 tcatttatatatcatgttagtaaaatggcataaagaaagtaaccaaaatcttggattgat 4889
Query: 644 tgaggatgaaaaatataaggattggaagctagcattttttctgattggaactggttacag 703
|||||||||||| ||| |||| | ||||||| |||||||||||||||||| ||||||
Sbjct: 4888 tgaggatgaaaatagaaagtattgaaggctagca-tttttctgattggaactgtttacag 4830
Query: 704 ttcaattgg 712
|||||||||
Sbjct: 4829 ttcaattgg 4821
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,413
Number of Sequences: 1807
Number of extensions: 11413
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)