BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF10FM1.SCF screened BAC_end
(991 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1439 624 e-179
>3x_Contig1439
Length = 7662
Score = 624 bits (315), Expect = e-179
Identities = 367/383 (95%), Gaps = 1/383 (0%)
Strand = Plus / Plus
Query: 90 aaagtgtttagcttgaccatttgttcattcagaccttctttcaactgctttttagtgcct 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2834 aaagtgtttagcttgaccatttgttcattcagaccttctttcaactgctttttagtgcct 2893
Query: 150 gtttgaattgaacccaacatgattccaagacttttcagctcataacttttgatcccatct 209
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2894 gtttgaattgaacccaacatgagtccaagacttttcagctcataacttttgatcccatct 2953
Query: 210 agattctggtgctttaccttcaacttactcatactgagtgatcatgtggtacccccacct 269
|||| || || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 agatacttgttcaataccttcaacttactcatactgagtgatcatgtggtacccccacct 3013
Query: 270 cttttttcctttacctagaaactatttatgagatggtgccctttttgtttaccttttgaa 329
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 ctttttccctttacctagaaactatttatgagatggtgccctttttgtttaccttttgaa 3073
Query: 330 ggttgaagaactgattatcatgatctaagagatgagtacttctaacgtaaaagaagacat 389
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 3074 ggttgaagaactgattatcaggatctaagagatgagtacatctaacgtaaaagaagacat 3133
Query: 390 attagaagaatacactgtcccctggggtaaaaaagaatagctaagaaattcgccacatga 449
||||||||||||||||||||||||||||| ||| ||||||||| |||||||| | |||||
Sbjct: 3134 attagaagaatacactgtcccctggggtagaaatgaatagctatgaaattcgtcgcatga 3193
Query: 450 cttagacgatgaaatctatggcc 472
| | |||||||||||||||||||
Sbjct: 3194 cgt-gacgatgaaatctatggcc 3215
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,340
Number of Sequences: 1807
Number of extensions: 21340
Number of successful extensions: 506
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)