BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF10RM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig782 599 e-171
3x_Contig879 470 e-132
>3x_Contig782
Length = 2529
Score = 599 bits (302), Expect = e-171
Identities = 317/321 (98%), Gaps = 1/321 (0%)
Strand = Plus / Plus
Query: 48 tagttgatcaatgaactctaacgtgattctgtcacgcaaatgttcagtaatatcttctct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 tagttgatcaatgaactctaacgtgattctgtcacgcaaatgttcagtaatatcttctct 2268
Query: 108 ttgtaacatatgcgtaaagaaccaacagagccgaacatcgaatatctccgaatgcgatct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 ttgtaacatatgcgtaaagaaccaacagagccgaacatcgaatatctccgaatgcgatct 2328
Query: 168 caattcatctaaaagttgctcaactgggatagttgggcaagcaaataacttcataatatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 caattcatctaaaagttgctcaactgggatagttgggcaagcaaataacttcataatatt 2388
Query: 228 cattgacaagttttcaaaagttgaaacagacgatgtatcaacaaatggatttgatatagc 287
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 2389 cattgacaagttttcaaaagttgaaacagacgatgtttcaacaaatgggtttgatatagc 2448
Query: 288 attcataatcaaatcttctagagtcaatgaatcgatatctccataatatacttgtaaacc 347
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2449 attcataatcaaatcttctagagtcaatgaatcgatatctncataatatacttgtaaacc 2508
Query: 348 taa-attcactaaccgcgaaa 367
||| |||||||||||||||||
Sbjct: 2509 taanattcactaaccgcgaaa 2529
>3x_Contig879
Length = 2855
Score = 470 bits (237), Expect = e-132
Identities = 328/353 (92%), Gaps = 4/353 (1%)
Strand = Plus / Minus
Query: 444 tggatccactatagagcctaaagatttccatttagttaactgtagttgcgcgatttcacg 503
|||||| ||||| |||| |||||||||| |||||||||| |||||||| | ||||| |||
Sbjct: 2671 tggatcaactatggagcataaagatttcaatttagttaaatgtagttgagagatttaacg 2612
Query: 504 aacaattggatcattggaccccagtaacgttatcaaaacagataaatgtttgtttttgga 563
||||||||||| |||||| ||||| ||||| |||| |||||||||||||||||||||
Sbjct: 2611 aacaattggataattggaaaaaagtaaagttataaaaaaagataaatgtttgtttttgga 2552
Query: 564 aattatagccgtctttgaagcatttacaatgtcgttgacagagaggaaaagaagtatttt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2551 aattatagccgtctttgaagcatttacaatgtcgttgacagagaggaaaagaagtatttt 2492
Query: 624 ctgaatatcagaagcagtggatagcatagaatcaatctcagcccttgtttcatcgactat 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2491 ctgaatatcagaagcagtggatagcatagaatcaatctcagcccttgtttcatcgactat 2432
Query: 684 ccattcacagagctttgcatgcccgttgttttttaataagaactttttcaaacttctggg 743
|||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 2431 ccatccacagagctttgcatg-ccgttgttttttaataagaactttttc-aacttctggg 2374
Query: 744 gaattgaccacgtattggaggggaaagaggatccaacaaaatgggatgctaac 796
|||||||| |||| |||| ||||||||||||| |||||||| ||||||||||
Sbjct: 2373 gaattgacagcgta-tggaagggaaagaggatcaaacaaaat-ggatgctaac 2323
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7003
Number of Sequences: 1807
Number of extensions: 7003
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)