BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF11RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig386 1292 0.0
>3x_Contig386
Length = 1502
Score = 1292 bits (652), Expect = 0.0
Identities = 703/716 (98%), Gaps = 3/716 (0%)
Strand = Plus / Minus
Query: 44 gcttcttatcaaaatcacctgcctttttcttgttgtttggaattatacaacgaacgaaat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 gcttcttatcaaaatcacctgcctttttcttgttgtttggaattatacaacgaacgaaat 903
Query: 104 ggggatccgtattgccaagctgttcaatgagtgtatggagctgttccctatgtttgttag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ggggatccgtattgccaagctgttcaatgagtgtatggagctgttccctatgtttgttag 843
Query: 164 atgatgtcctaaaagaactgcctctaatgcgatctgcgaaaaattgtgataccagagggt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 atgatgtcctaaaagaactgcctctaatgcgatctgcgaaaaattgtgataccagagggt 783
Query: 224 tcgcacaatcattgagtacctgcaataaattttcatttaaaggatctttattctttgata 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tcgcacaatcattgagtacctgcaataaattttcatttaaaggatctttattctttgata 723
Query: 284 gccaatcagtaacgttgtattcaacatcacctgcataatgctttagtataaagcagttat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gccaatcagtaacgttgtattcaacatcacctgcataatgctttagtataaagcagttat 663
Query: 344 ccagcttagaccttttgaatttagtggatttattatcccaagatgaaagtaatttcgaat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ccagcttagaccttttgaatttagtggatttattatcccaagatgaaagtaatttcgaat 603
Query: 404 aaaaagaggcatctgaagattttggtaagatcgattcttcttctaaaatcggtagtatac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaaaagaggcatctgaagattttggtaagatcgattcttcttctaaaatcggtagtatac 543
Query: 464 ctggaatgctgctgtttttctgttcaattaaatcaattgtggtttgtaagtctttgccat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctggaatgctgctgtttttctgttcaattaaatcaattgtggtttgtaagtctttgccat 483
Query: 524 aatcgatgaaattccattggatgtcttccttttgatattcattttgttccaatacaaaca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aatcgatgaaattccattggatgtcttccttttgatattcattttgttccaatacaaaca 423
Query: 584 tatgatgattgaaaaactgttgtaatttctcatttgtgtaattgatacatagttgttcga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tatgatgattgaaaaactgttgtaatttctcatttgtgtaattgatacatagttgttcga 363
Query: 644 aagaattat-tttgaaaatttctaacccagcgattttcaattatccattaaaatattcag 702
||||||||| |||||||||||| ||||||||||| | |||| ||||| ||||||||||||
Sbjct: 362 aagaattatctttgaaaatttcgaacccagcgatatccaataatccaataaaatattcag 303
Query: 703 tcattgataccttgctttaaactcttgttaatttgattttacaatattttccaaaa 758
|||| ||| || |||| ||||||||||||||||||| |||||||||| ||| ||||
Sbjct: 302 tcatcgat-ccatgctctaaactcttgttaatttga-tttacaatatattcgaaaa 249
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9571
Number of Sequences: 1807
Number of extensions: 9571
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)