BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF12FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 557 e-158
>3x_Contig1742
Length = 17167
Score = 557 bits (281), Expect = e-158
Identities = 376/397 (94%), Gaps = 8/397 (2%)
Strand = Plus / Minus
Query: 291 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7791 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 7732
Query: 351 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7731 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 7672
Query: 411 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7671 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 7612
Query: 471 atatttgttcaaataaggaaagatttgcagggaataatgaaggcaatcccgatagatcta 530
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7611 atatttgttcaaataaggaaaga-ttgcagggaataatgaaggcaatcccgatagatcta 7553
Query: 531 agaaataaagttttcggtaatttttgatagttccctttataattcaatgcaagtctcttg 590
|||||||||| ||||||||| |||||||||||||| |||||| ||||||| || ||||||
Sbjct: 7552 agaaataaag-tttcggtaa-ttttgatagttccc-ttataa-tcaatgc-agcctcttg 7498
Query: 591 caccgattgaaagttttgttgaaattcatgtgaaatattgttaagagtcgaaactgcgtt 650
||||||||||| | ||||||||| | ||||||| |||||| | |||||||| |||||||
Sbjct: 7497 caccgattgaatg-tttgttgaattcaatgtgaagtattgtaatgagtcgaagctgcgtt 7439
Query: 651 gccaaaacttctttgaaaattggttttgtccaatttt 687
|| ||| | ||||||| ||||||||||||| ||||||
Sbjct: 7438 gcgaaagc-tctttgataattggttttgtcaaatttt 7403
Score = 408 bits (206), Expect = e-114
Identities = 206/206 (100%)
Strand = Plus / Minus
Query: 72 agcagagtcattgagcttatctaaaatattaccggctgtttcactgattagttcaccatc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8010 agcagagtcattgagcttatctaaaatattaccggctgtttcactgattagttcaccatc 7951
Query: 132 gaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaattgactt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7950 gaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaattgactt 7891
Query: 192 ctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatgttctc 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7890 ctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatgttctc 7831
Query: 252 gtagttgaagtccaagttaatcaact 277
||||||||||||||||||||||||||
Sbjct: 7830 gtagttgaagtccaagttaatcaact 7805
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,086
Number of Sequences: 1807
Number of extensions: 17086
Number of successful extensions: 400
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)