BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZF12RM1.SCF screened BAC_end
(999 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 985 0.0
>3x_Contig1731
Length = 24233
Score = 985 bits (497), Expect = 0.0
Identities = 544/557 (97%), Gaps = 2/557 (0%)
Strand = Plus / Plus
Query: 69 cttgtacattggtaacgaagagtttggcatatttaacgtggattcgataacagctgatac 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15509 cttgtacattggtaacgaagagtttggcatatttaacgtggattcgataacagctgatac 15568
Query: 129 tcttgttggtgcctctggctgatcctactcttggtattttctttctctgcttctcaaaag 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15569 tcttgttggtgcctctggctgatcctactcttggtattttctttctctgcttctcaaaag 15628
Query: 189 acaagctcatcatataactcataagctcatcgcatcttttcaattatttgttttttgtgg 248
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 15629 acaagctcatcatataactcataagctcatcgcatcttttcaattatttgtctaatgtgg 15688
Query: 249 attcttttttttcaccgtatgtagaattgtagttttggaaaattttatggttgaaacctg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15689 attcttttttttcaccgtatgtagaattgtagttttggaaaattttatggttgaaacctg 15748
Query: 309 tgcaggacgaggatttgaaaagaaacgatggtcatctctatcgtgagaagtgacatataa 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15749 tgcaggacgaggatttgaaaagaaacgatggtcatctctatcgtgagaagtgacatataa 15808
Query: 369 gggcatctaatgaaaaatttagaaccgatgaaaaattaaagtattaagaattaagaaagc 428
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 15809 gggcatctaatgaaaaatttggaaccgatgaaaaattaaagtattaagaattaagaaagc 15868
Query: 429 tggttgaatatgatgatttgtgatgcaaattatatgagttttcaaaaggtcgagcaggtt 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15869 tggttgaatatgatgatttgtgatgcaaattatatgagttttcaaaaggtcgagcaggtt 15928
Query: 489 ttgatccacttattgtgatagtttataaatctcggagggtttattccaggtttccaggtt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15929 ttgatccacttattgtgatagtttataaatctcggagggtttattccaggtttccaggtt 15988
Query: 549 tctatgttttttttcgtttcgattttcctttaaagagagattaattgttccacttaaatg 608
|||| |||||||||||||||||| | | |||||||||||| | ||||||||| ||| |||
Sbjct: 15989 tctaggttttttttcgtttcgatatacttttaaagagaga-tgattgttccagttagatg 16047
Query: 609 ctttttcctgtgggaaa 625
||||||||||||||||
Sbjct: 16048 -tttttcctgtgggaaa 16063
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9077
Number of Sequences: 1807
Number of extensions: 9077
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 999
length of database: 10,358,551
effective HSP length: 16
effective length of query: 983
effective length of database: 10,329,639
effective search space: 10154035137
effective search space used: 10154035137
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)