BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZG01FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1249 0.0
>3x_Contig1629
Length = 12481
Score = 1249 bits (630), Expect = 0.0
Identities = 651/654 (99%), Gaps = 3/654 (0%)
Strand = Plus / Minus
Query: 88 cattgaaacgaactccttgaaaactacagacaccatagaatcagattcccaagctgaaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3575 cattgaaacgaactccttgaaaactacagacaccatagaatcagattcccaagctgaaaa 3516
Query: 148 gagtcttcaacccccaaaacatttgttggaaaccccagttaaagtggctgatgttgacga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3515 gagtcttcaacccccaaaacatttgttggaaaccccagttaaagtggctgatgttgacga 3456
Query: 208 aaacggtgtggctagattcgacaagaaaagagttatgggtttcttgagacagatgaaatc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3455 aaacggtgtggctagattcgacaagaaaagagttatgggtttcttgagacagatgaaatc 3396
Query: 268 gaaaaataagacattggatgacaaaccactccctgaacaaacaaaaaggtttactatccc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3395 gaaaaataagacattggatgacaaaccactccctgaacaaacaaaaaggtttactatccc 3336
Query: 328 ttcgtcaccagcgggtcctccaaattcaacgggtacaattgctgaaccattgacgccgaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3335 ttcgtcaccagcgggtcctccaaattcaacgggtacaattgctgaaccattgacgccgaa 3276
Query: 388 atgctctcaattgatgcaatttagaactggtttcactccgaattttaacattgacgagtt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3275 atgctctcaattgatgcaatttagaactggtttcactccgaattttaacattgacgagtt 3216
Query: 448 acttgtgagtccgaaacttcaagaatcattgaataaaaaccttttcaaatctcctaacca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3215 acttgtgagtccgaaacttcaagaatcattgaataaaaaccttttcaaatctcctaacca 3156
Query: 508 atacgtatttaaagtactgtctggagatcccctgttgatcaacgatcatcaggagacaga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3155 atacgtatttaaagtactgtctggagatcccctgttgatcaacgatcatcaggagacaga 3096
Query: 568 tattatgaatcctcctcatagccaagaagtgtcagatatattatcatttctaaattctcc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3095 tattatgaatcctcctcatagccaagaagtgtcagatatattatcatttctaaattctcc 3036
Query: 628 aaaacgaggaaccaatttgagtaccccaccatctcatttggtcaatttcagctcaccaag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3035 aaaacgaggaaccaatttgagtaccccaccatctcatttggtcaatttcagctcaccaag 2976
Query: 688 agcgaatagcagaacatttcgcatccaattttgaacaatgtaaaagctgcaatt 741
|||||||||||||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct: 2975 agcgaatagcagaaca-ttcgcatccaa-tttgaacaatgt-aaagctgcaatt 2925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7011
Number of Sequences: 1807
Number of extensions: 7011
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)