BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZG03FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig893 1112 0.0
>3x_Contig893
Length = 2804
Score = 1112 bits (561), Expect = 0.0
Identities = 663/684 (96%), Gaps = 11/684 (1%)
Strand = Plus / Plus
Query: 86 ttatataaaattggaacaaaatctattcagttctcatacagtaatcgtactcaaatcgaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 ttatataaaattggaacaaaatctattcagttctcatacagtaatcgtactcaaatcgaa 1147
Query: 146 attcaaggcctttaatctcgatactatgtctgccacgtcacgggtagcaaattggtccat 205
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1148 attcaaggcctttaatctcgatacgatgtctgccacgtcacgggtagcaaattggtccat 1207
Query: 206 gaatttcttataac--tagttctaatccatccgctttgtgttccatcttttccaatggga 263
|||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 gaatttctta-aacgatagatctaatccatccgctttgtgttccatcttttccaatggga 1266
Query: 264 aaagggtatgcaatagtttacgcttaccagcagtaattctcaatggttctccatcgacaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 aaagggtatgcaatagtttacgcttaccagcagtaattctcaatggttctccatcgacaa 1326
Query: 324 caactttgtacaatacggtgacttcgttgccattggcatctgtgacagtctcagcgtcct 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 caactttgtacaatacggtgacttcgttgccattggcatctgtgacagtctcagcgtcct 1386
Query: 384 tatgtacaggattggcagctttttccttagagttcagtagtctgtaacggagtttccaac 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 tatgtacaggattggcagctttttccttagagttcagtagtctgtaacggagtttccaac 1446
Query: 444 cagtaggtcccaattccttaattctggcggccttttccttagtcaaatagttgtcaatac 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 cagtaggtcccaattccttaattctggcggccttttccttagtcaaatagttgtcaatac 1506
Query: 504 caccttccttggtaattgttcttaaaacttttgctgtcatctttatactaatctttctgt 563
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1507 caccttccttggtaattgttcttaaaacttttgctgtcatcttaatactaatctttctgt 1566
Query: 564 tcaaagtctcactccatagtccttttctaataacgtttggactccatgatctcctggttt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 tcaaagtctcactccatagtccttttctaataacgtttggactccatgatctcctggttt 1626
Query: 624 ttgtcttcgattcagcgatgtttattacccgattggattaaagacgcaccgtattaaact 683
|||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||
Sbjct: 1627 ttgtcttcgattcagcgatg-ttattaccgaattggatgaaagacgcaccgta-taaacc 1684
Query: 684 tttgttacctttgtttgtaaattggaaattcttccgtatggattaatcaggggaattcct 743
||||||| || ||||||||||||||| |||| |||||||||| |||||| ||||||||||
Sbjct: 1685 tttgtta-ctctgtttgtaaattggagattc-tccgtatgga-taatca-gggaattcct 1740
Query: 744 tccttttcctttggggatatataa 767
| ||| |||||| |||||||||||
Sbjct: 1741 t-cttctccttt-gggatatataa 1762
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7108
Number of Sequences: 1807
Number of extensions: 7108
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)