BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZG03RM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig888 1090 0.0
>3x_Contig888
Length = 2072
Score = 1090 bits (550), Expect = 0.0
Identities = 647/670 (96%), Gaps = 7/670 (1%)
Strand = Plus / Minus
Query: 45 cttcgtaacacgaaactacttcttgatgcgatggacactgctatcacaaaatccataaaa 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 cttcgtaacacgaaactacttcttgatgcgatggacactgctatcacaaaatccataaaa 861
Query: 105 gaaatacaatccttgcatgattacacgccagccaagaaaagtgggtttggtcacaagctg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gaaatacaatccttgcatgattacacgccagccaagaaaagtgggtttggtcacaagctg 801
Query: 165 aaggatgtttatcaaaagaaccataagaagagccatgaggcagaagccggtatgaactat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaggatgtttatcaaaagaaccataagaagagccatgaggcagaagccggtatgaactat 741
Query: 225 aaatggagcaacaaacagcttttcgagctaggcgttttgtcgaaagtaactggaaatggt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaatggagcaacaaacagcttttcgagctaggcgttttgtcgaaagtaactggaaatggt 681
Query: 285 gctaagaattcatcagtcagctttttcggttccagtggatcaaagtctcaatatgttgat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gctaagaattcatcagtcagctttttcggttccagtggatcaaagtctcaatatgttgat 621
Query: 345 ctcaaattctctactagagatggtgaagtgtttggaattgagttgattgacaataagaac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctcaaattctctactagagatggtgaagtgtttggaattgagttgattgacaataagaac 561
Query: 405 aagtttgattctaatttacaatctgttgtgaagtttagtgaattgattgaaaaagaagca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagtttgattctaatttacaatctgttgtgaagtttagtgaattgattgaaaaagaagca 501
Query: 465 gctgaccgccattccacgatttctattcttggaagaaaggagaagatggttcttaacgtt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctgaccgccattccacgatttctattcttggaagaaaggagaagatggttcttaacgtt 441
Query: 525 ggcaaattactagatttgcttgttgacaggtttttcaggttttgaataat-ttcaatgtt 583
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 440 ggcaaattactagatttgcttgttgacagttttttcaggttttgaataatattcaatgtt 381
Query: 584 tgaacttttggtaatattttatttctgagaacattattatttaatttattgtggccaaag 643
|||||||| ||||| | ||||||||||||||||| || ||| |||||||| |||||||
Sbjct: 380 agaactttt-gtaattatctatttctgagaacatta-taattagtttattgt-gccaaag 324
Query: 644 ctttatctttaaaacaattaaaa-tactttatttatttttaactttcggtaccctcattt 702
||| ||| | || |||||||||| ||||| | ||||| |||||||||| || | |||| |
Sbjct: 323 cttaatcatcaagacaattaaaattacttca-ttattattaactttcgtta-catcatat 266
Query: 703 tacttaaaaa 712
||||||||||
Sbjct: 265 tacttaaaaa 256
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8877
Number of Sequences: 1807
Number of extensions: 8877
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)