BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZG05FM1.SCF screened BAC_end
         (967 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1592                                                         856   0.0  

>3x_Contig1592 
          Length = 12307

 Score =  856 bits (432), Expect = 0.0
 Identities = 459/467 (98%), Gaps = 1/467 (0%)
 Strand = Plus / Minus

                                                                        
Query: 89   tgattaatgaggaaccgtcgatgcctctctgtcatgatcctgcagccaatgctggggctt 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3133 tgattaatgaggaaccgtcgatgcctctctgtcatgatcctgcagccaatgctggggctt 3074

                                                                        
Query: 149  cggtttccgaaaccgataagctgtcaaatcaagaagaaatagtacaggatattattcctt 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3073 cggtttccgaaaccgataagctgtcaaatcaagaagaaatagtacaggatattattcctt 3014

                                                                        
Query: 209  ctaatgactgtaatcntttgaagtgttccgaagtctgggatcgtattactgcacatccac 268
            |||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3013 ctaatgacggtaaacttttgaagtgttccgaagtctgggatcgtattactgcacatccac 2954

                                                                        
Query: 269  gttactcggacctagatatcgatggtctatgtttggagctacggacaaaggctaaatgtt 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2953 gttactcggacctagatatcgatggtctatgtttggagctacggacaaaggctaaatgtt 2894

                                                                        
Query: 329  cggaaaaaggtgtcgttgtcaatgcggaggatgttcaaaaggctttgatttcgcatatgc 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2893 cggaaaaaggtgtcgttgtcaatgcggaggatgttcaaaaggctttgatttcgcatatgc 2834

                                                                        
Query: 389  aatgaataatcatttcacttggtttcgcaccacaatactgttacgttcaaattaacggtt 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 aatgaataatcatttcacttggtttcgcaccacaatactgttacgttcaaattaacggtt 2774

                                                                        
Query: 449  tcaattcttttaacgagtttccgatgtctttctttttgaagtagaggacatatttttttc 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2773 tcaattcttttaacgagtttccgatgtctttctttttgaagtagaggacatatctttttc 2714

                                                           
Query: 509  gaatggataattaccaacttcttattcctggaagaaacttaaattac 555
            |||||||||||||| |||| || |||||| |||||||||||||||||
Sbjct: 2713 gaatggataattacgaactcctcattcct-gaagaaacttaaattac 2668


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,339
Number of Sequences: 1807
Number of extensions: 17339
Number of successful extensions: 2264
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)