BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZG05RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1176 0.0
>3x_Contig1486
Length = 12131
Score = 1176 bits (593), Expect = 0.0
Identities = 659/673 (97%), Gaps = 6/673 (0%)
Strand = Plus / Minus
Query: 45 cttgtatcttcttctcctgttcataaacactttgagtacaaatcaatgcactcttgatat 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2963 cttgtatcttcttctcctgttcagaaacactttgagtacaaatcaatgcactcttgatat 2904
Query: 105 ctgggatttgatacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatctg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2903 ctgggatttgatacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatctg 2844
Query: 165 ctgtggcagtttttatgagttccttttatagtgcataagtaagatcaaatgttttggttg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2843 ctgtggcagtttttatgagttccttttatagtgcataagtaagatcaaatgttttggttg 2784
Query: 225 attcaatatataaaatttttttaatatgttaacaataatcctattaaactaatatcaaac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2783 attcaatatataaaatttttttaatatgttaacaataatcctattaaactaatatcaaac 2724
Query: 285 gaattcaacatggcactagtgactgacattaataaaggataactgcgatctgattatagt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2723 gaattcaacatggcactagtgactgacattaataaaggataactgcgatctgattatagt 2664
Query: 345 tacactaacatcgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccggc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2663 tacactaacatcgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccggc 2604
Query: 405 tctaaagtaggagctcctatggtacctccaatcaattgcatatacaactaccttcatcat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2603 tctaaagtaggagctcctatggtacctccaatcaattgcatatacaactaccttcatcat 2544
Query: 465 cagacaacagtaacgttttggttatacgaacaagtacagacacgtataagaggcaagatc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2543 cagacaacagtaacgttttggttatacgaacaagtacagacacgtataagaggcaagatc 2484
Query: 525 agaggctttgatgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtagat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 agaggctttgatgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtagat 2424
Query: 585 cccaaaagtggtaaagagagcgatgataaagca-tgttcctttgggagaaatatgttgaa 643
|| |||||||||||||||||||||||||||||| |||| | ||||||||| |||||||||
Sbjct: 2423 ccgaaaagtggtaaagagagcgatgataaagcagtgtttc-ttgggagaattatgttgaa 2365
Query: 644 aggtgat-atattacacttgttgtggccatttg-caatgccctactca-aaaatgataat 700
||||||| |||| |||||||||||||| | ||| |||| |||||||| |||||||||||
Sbjct: 2364 aggtgataatataacacttgttgtggcaaattgataatg-cctactcagaaaatgataat 2306
Query: 701 aggatgaaagaaa 713
|||||||||||||
Sbjct: 2305 aggatgaaagaaa 2293
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8384
Number of Sequences: 1807
Number of extensions: 8384
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)