BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZG06RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1358 0.0
>3x_Contig1770
Length = 29267
Score = 1358 bits (685), Expect = 0.0
Identities = 716/721 (99%), Gaps = 4/721 (0%)
Strand = Plus / Minus
Query: 47 atcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgttggt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8035 atcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgttggt 7976
Query: 107 gagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgtcagt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7975 gagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgtcagt 7916
Query: 167 ccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaaacat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7915 ccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaaacat 7856
Query: 227 gaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaacaga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7855 gaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaacaga 7796
Query: 287 ttctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggtcgaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7795 ttctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggtcgaa 7736
Query: 347 gttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggatggtt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7735 gttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggatggtt 7676
Query: 407 gtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggctcgt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7675 gtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggctcgt 7616
Query: 467 catttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaagtat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7615 catttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaagtat 7556
Query: 527 caacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttactggat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7555 caacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttactggat 7496
Query: 587 aacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaattcatgtat 646
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7495 aacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccatgtat 7436
Query: 647 tatgggtcaacagttccaggaagatattgattttctacaacttcgatgaaagagctaagg 706
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7435 tat-ggtcaacagttccaggaagatattga-tttctacaacttcgatgaaagagctaagg 7378
Query: 707 agtttggaggagaacttaatattttggaatgctaccaaggaatttcttgaatgctacaca 766
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7377 ag-ttggaggagaacttaatattttggaatgctaccaa-gaatttcttgaatgctacaca 7320
Query: 767 g 767
|
Sbjct: 7319 g 7319
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7530
Number of Sequences: 1807
Number of extensions: 7530
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)