BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC6ZG09FM1.SCF screened BAC_end (964 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig245 482 e-136 3x_Contig139 198 1e-50 >3x_Contig245 Length = 1434 Score = 482 bits (243), Expect = e-136 Identities = 335/355 (94%), Gaps = 8/355 (2%) Strand = Plus / Plus Query: 278 acaaggtaccagccaaagctttctaaaatacaagtttaaggtcaatcagagaagagctga 337 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 449 acaaggtaccagccaaagctttcaaaaatacaagtttaaggtcaatcagagaagagctga 508 Query: 338 tcggcaagattatgtctgttgtcgaacaaaaaatgccactaacgagtggaattgcatggg 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 tcggcaagattatgtctgttgtcgaacaaaaaatgccactaacgagtggaattgcatggg 568 Query: 398 gttccagcagtaatagctgtaataactccgctactgataatatccactctaatatcaatt 457 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 569 gttccagcagtaatagctgtaataactccgctactgataatatccacgctaatatcaatt 628 Query: 458 tcaatggtaacttgaacaatgtaactaattccaacattcgttcatgatcaatacggtacc 517 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | Sbjct: 629 tcaatggtaacttgaacaatgtaactaattccaaca-tcgttcatgatcaatacgg-agc 686 Query: 518 accggtacattaaacctatatcatagtggccttccacattggcccaaaatacttcgaagg 577 |||||||||| ||| ||||| |||||||| |||||||| | | ||||||||||||| ||| Sbjct: 687 accggtacatcaaagctatagcatagtgg-cttccacaattggccaaaatacttcg-agg 744 Query: 578 ccgtttcctaccacctcctgtttatggctattccatagtcccttatggggttcct 632 ||| || ||||||||| ||| |||||||| ||||||| |||||||||||||||| Sbjct: 745 ccggtt-ctaccacct-ctgcatatggcta-tccatag-cccttatggggttcct 795 >3x_Contig139 Length = 903 Score = 198 bits (100), Expect = 1e-50 Identities = 109/112 (97%) Strand = Plus / Minus Query: 93 cggccggagacactttacattaacgtgagtaaagtctaacagagagaaagagaatagtct 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112 cggccggagacactttacattaacgtgagtaaagtctaacagagagaaagagaatagtct 53 Query: 153 tctatagaacagctttacttttcatggttctacccagggtcttgaaaactta 204 |||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 52 tctatagaacagctttacagtacatggttctacccagggtcttgaaaactta 1 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8420 Number of Sequences: 1807 Number of extensions: 8420 Number of successful extensions: 71 Number of sequences better than 1.0e-20: 2 length of query: 964 length of database: 10,358,551 effective HSP length: 16 effective length of query: 948 effective length of database: 10,329,639 effective search space: 9792497772 effective search space used: 9792497772 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)