BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZG09FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig245 482 e-136
3x_Contig139 198 1e-50
>3x_Contig245
Length = 1434
Score = 482 bits (243), Expect = e-136
Identities = 335/355 (94%), Gaps = 8/355 (2%)
Strand = Plus / Plus
Query: 278 acaaggtaccagccaaagctttctaaaatacaagtttaaggtcaatcagagaagagctga 337
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 449 acaaggtaccagccaaagctttcaaaaatacaagtttaaggtcaatcagagaagagctga 508
Query: 338 tcggcaagattatgtctgttgtcgaacaaaaaatgccactaacgagtggaattgcatggg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcggcaagattatgtctgttgtcgaacaaaaaatgccactaacgagtggaattgcatggg 568
Query: 398 gttccagcagtaatagctgtaataactccgctactgataatatccactctaatatcaatt 457
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 569 gttccagcagtaatagctgtaataactccgctactgataatatccacgctaatatcaatt 628
Query: 458 tcaatggtaacttgaacaatgtaactaattccaacattcgttcatgatcaatacggtacc 517
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct: 629 tcaatggtaacttgaacaatgtaactaattccaaca-tcgttcatgatcaatacgg-agc 686
Query: 518 accggtacattaaacctatatcatagtggccttccacattggcccaaaatacttcgaagg 577
|||||||||| ||| ||||| |||||||| |||||||| | | ||||||||||||| |||
Sbjct: 687 accggtacatcaaagctatagcatagtgg-cttccacaattggccaaaatacttcg-agg 744
Query: 578 ccgtttcctaccacctcctgtttatggctattccatagtcccttatggggttcct 632
||| || ||||||||| ||| |||||||| ||||||| ||||||||||||||||
Sbjct: 745 ccggtt-ctaccacct-ctgcatatggcta-tccatag-cccttatggggttcct 795
>3x_Contig139
Length = 903
Score = 198 bits (100), Expect = 1e-50
Identities = 109/112 (97%)
Strand = Plus / Minus
Query: 93 cggccggagacactttacattaacgtgagtaaagtctaacagagagaaagagaatagtct 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 cggccggagacactttacattaacgtgagtaaagtctaacagagagaaagagaatagtct 53
Query: 153 tctatagaacagctttacttttcatggttctacccagggtcttgaaaactta 204
|||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 52 tctatagaacagctttacagtacatggttctacccagggtcttgaaaactta 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8420
Number of Sequences: 1807
Number of extensions: 8420
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 2
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)